Faecalibacterium taiwanense: PXT33_013815
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Entry
PXT33_013815 CDS
T10210
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ftk Faecalibacterium taiwanense
Pathway
ftk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ftk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PXT33_013815 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ftk03400
]
PXT33_013815 (mfd)
Enzymes [BR:
ftk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PXT33_013815 (mfd)
DNA repair and recombination proteins [BR:
ftk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PXT33_013815 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
CarD_TRCF_RID
UvrB_inter
Helicase_C
ResIII
SNF2-rel_dom
Cas3-like_C_2
AAA_25
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
XBA10167
LinkDB
All DBs
Position
2781158..2784187
Genome browser
AA seq
1009 aa
AA seq
DB search
MARLFAAGYVRRSQVDGPGQFSVRGDIVDIYAPDMRQPARVEYWDDEIDSISSFDLLTQR
RDSALEKIYLSPAREVLFGDTAETAEALRSAIKKARGRHRTALEKATEADLAQLDSGLVP
EAMDKYYGLRYPSPATLLDHLDTPLFILDEVGGIRDAQKATEFRRSEELTGLLEEGVLCP
GLDVLYQTMDDLAAAAQKQSTLLCENFLRGMNEFKLKDLINAEAFAAPNWNGDLVSLRED
LDPLIAQGYAVTLFSGTPKGAAALTRDLADKGYSVSMSRDVRPTKGIVQVLPGHLTAGCT
FPFAHAAVLSSRRHGLEEETSAETKKRKKNKNALSSLSDIKPGDYVVHQSHGIGMYAGIQ
RLEVQGATKDYLKVQYSGSDVLYVPVTQLDLLSRYTAPGDEEKVKLAKLGGAEWQRTRAK
VKKATEEMAQELIELYARRRQATGYAFPPDGDWQRDFETRFDYDETDDQLNATAEIKQDM
EKGWPMDRLLCGDVGVGKTEVALRAAFKCVMGGKQCAILAPTTLLAWQHYNTILSRMEAF
PVKVEMMSRFRTAKQQKETLRGLQSGSVDIVVGTHRLLSKDVKFHDLGLVIIDEEQRFGV
KHKEKLKENFIGVDMLTLSATPIPRTLNMAMSGIRDLSTIEQPPIERQPVETFVLEYNDV
ILAEAMKKELARGGQVYYLHNRVDNIEACAAHVSKLVPGARIGIAHGKMTEEELNPVWQH
LLNGEIDILVCTTLIETGIDVRNCNTLIIEDADRMGLAQLYQIRGRVGRSGRKAYAYFTF
RRDKTLTDIAQKRLSAIREFTAFGSGFRIAMRDLQIRGAGSLLGHSQHGHMEAVGYDLYV
KMLGQAIARAKGEPVRRDKSECLVDLRVDAFIPEKYIADGPGRIEAYKRIAAIQTAEDAA
DVLDELIDRYGDPPPSVSDLVNVSLVRVQASAVGVTEVTQKKDTLTLQLESLELPMIRGL
LVAFNGRVTAGAGNRPYLSVTLQPDEKPLELLQSILKAMAEILASAEQK
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
gtggcccggctgttcgccgccgggtatgtgcggcgcagtcaggtggacggcccgggacag
ttcagtgtgcgcggcgatatcgtggatatctatgcgccggatatgcgccagcctgcccgc
gtggagtactgggacgacgagatcgattccatttcctccttcgatctgctcacccagcgg
cgggacagcgcactggaaaagatctatctttcccctgcccgcgaggtgctgttcggcgat
accgccgagactgccgaggccctgcgttccgccatcaaaaaggcacgcggccggcaccgc
accgcactggaaaaggccacggaagccgaccttgctcagctggactccggcctggtgccg
gaagccatggataaatactacggcctgcgctatccgagcccggccaccctgctggatcat
ctggacacaccgctgttcattctggacgaggtgggcggcatccgggatgcccagaaggcc
accgagttccgtcgcagcgaagagctgaccggcctgttggaagagggtgtgctctgcccc
gggctggatgtactctaccagaccatggacgaccttgccgctgccgcccagaagcagagc
accctgctgtgcgagaacttcctgcgcggcatgaacgaatttaagctgaaagacctcatc
aacgccgaggcctttgccgcccccaactggaacggcgaccttgtctccctgcgagaagac
cttgaccccctcattgcgcagggctatgccgtcaccctgttttccggaacgcccaagggt
gccgccgccctcacccgcgaccttgccgacaagggctactccgtgagcatgagccgggat
gtgcggcccacaaaaggcatcgtacaggtgctgccgggccatctgaccgccgggtgcacc
tttccgtttgcccatgcggcggtgctgtccagccgcaggcacggcctggaggaagagacc
tccgccgagaccaaaaagcgcaaaaagaacaagaacgccctttccagcctttcggacatc
aagcccggggactatgtggtgcaccagagccacggcatcggcatgtatgcgggcatccag
cggctggaagtgcagggtgccacgaaagattaccttaaggtacagtattccggctcggac
gtgctgtatgtaccggtgacccagctggacctgctgagccgctacaccgcccccggcgac
gaggaaaaggtaaagctggcaaagctgggcggtgccgagtggcaacgcacccgcgccaag
gtaaaaaaagccaccgaggagatggcgcaggaactgatcgagctctacgcccgccgccgt
caggccacgggctacgccttcccgccggacggcgactggcagcgggactttgagacccgc
tttgactacgacgagacagacgaccagctgaacgccaccgccgagatcaagcaggacatg
gaaaagggctggcccatggaccgcctgctgtgcggcgacgtgggcgtgggcaagaccgaa
gtggccctgcgcgccgccttcaagtgtgtgatgggcggcaagcagtgcgccatccttgcc
cccaccaccctgctggcatggcagcactacaacaccattctttcccgcatggaagccttc
ccggtgaaggtggagatgatgtcccgcttccgcaccgcaaagcagcagaaggagaccctc
cggggcctgcagtcgggcagtgtggacatcgtggtgggcacccaccggctgctgtccaag
gacgtgaagttccatgacctcggccttgtcatcatcgacgaggagcagcgcttcggcgtc
aagcacaaggaaaagctcaaggagaacttcatcggggtggacatgctcaccctgtcggcc
actcccatcccccgcacgctgaacatggccatgagcggaatccgggacctttccaccatc
gagcagccgcccatcgagcgccagcccgtggagacctttgtgctggaatacaacgacgtg
atccttgccgaagccatgaagaaggagcttgcccggggcgggcaggtgtactacctgcac
aaccgggtggacaacatcgaagcctgcgccgcccatgtgagcaagctggtgcccggcgca
cgcatcggcattgcccacggcaagatgaccgaggaagagctgaaccccgtgtggcagcat
ctgctgaacggcgagatcgatattctggtgtgcaccaccctcatcgagaccggcatcgac
gtgcgcaactgcaacaccctcatcatcgaggatgccgaccgcatgggccttgcccagctg
taccagatcagaggccgggtgggccgctccggccgcaaggcctatgcctacttcaccttc
cggcgagacaagactctgaccgatatcgcccagaagcggctctccgctatccgggagttc
acggccttcggctccggcttccgcatcgccatgcgggatctgcagatccggggtgcgggc
agtcttctgggccacagccagcacggccacatggaggccgtgggctacgacctctacgtg
aagatgctggggcaggccatcgcccgggccaagggcgaacctgtccggcgggacaagagc
gaatgccttgtggacctgcgggtggatgccttcatcccggagaaatatatcgcagacggc
ccgggccgcattgaagcttataagcgcattgccgccatccagacggcagaggatgccgcc
gatgtgctggacgagctcatcgaccgctacggcgacccgccgccctcggtaagcgatctg
gtgaacgtgtcgctggtacgcgtgcaggcttccgctgtgggcgtgaccgaagtgacccag
aaaaaggacaccctcaccctgcagctggaaagtctggagctgcccatgatccggggcctg
ctggtggccttcaatggccgcgtcaccgccggtgcaggcaaccggccctatctctcggtc
acgcttcagcccgacgaaaagccgctggagctgttgcaaagcatcctcaaggcgatggca
gagatccttgcctccgccgagcaaaaataa
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