Francisella tularensis subsp. novicida U112: FTN_1246
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Entry
FTN_1246 CDS
T00432
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ftn
Francisella tularensis subsp. novicida U112
Pathway
ftn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ftn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FTN_1246 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ftn03019
]
FTN_1246 (rne)
03009 Ribosome biogenesis [BR:
ftn03009
]
FTN_1246 (rne)
Enzymes [BR:
ftn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FTN_1246 (rne)
Messenger RNA biogenesis [BR:
ftn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FTN_1246 (rne)
Ribosome biogenesis [BR:
ftn03009
]
Prokaryotic type
rRNA processing factors
FTN_1246 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Antiterm
DnaJ_CXXCXGXG
Fyv8
Motif
Other DBs
NCBI-ProteinID:
ABK90127
UniProt:
A0Q7B2
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All DBs
Position
1312113..1314770
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AA seq
885 aa
AA seq
DB search
MKRILINSKSGEETRIATLDNGKLIDLDIESVDREQKKANIYKGYISRIEPSLNAIFVNY
GEEKNGFLPFKEVSEYYLKDVPNGENIAPLLSEGQELIVQIDKEERGDKGAALTTFITLA
GSYMVLLPNNPEGGGISRRVEGEDRERLKKYLKELNIPKNMSVIARTACVECSFEELKHD
FDTLVELWGSISQAYHRIKKPALLHKESDIIVRTVRDHLKEDVKEIIVDSKECFEDVKRQ
LSLLRQSFDINKVKLYNEELPLFAQFGIDQQIENAYKREIRLPSGGSIVIDTTEALVAID
VNSSRANKAEDVETTAFKTNLEAAEEVARQLRIRDLGGLVIVDFIDMSFYPNRKQVEEKL
MEALQQDRARIQMSRISKLGLVEISRQRLSSSINESVMQKCPRCEGHGFIKTTQATALTI
LRKIRAEAIKEDTNEIRVQVPVDIAAYILNEKRDSIVEIERISQVKVMIIPNFNMESPKF
QMQRIWGTSYKSNRTSSELIEDVYNIEIPKAGKKKIAAVDLNQAIENQAASNTQEQKPQT
DAQVDIVTQNDKKQDDVTQQAKKKGFFARLFSGIFATDSKAAQQANNSAQKQQNKEQNFQ
RQQQHNKAQKDNNQRNERNNNNNKNERNKNRNNKGAKPQIAQENKPQKDNSQRSDLNANG
NSNNDKNERNKNKSNNDKFDKKSNNRNSRSNNLNLNNAEEVIDITQLKYQNQTAIAKTDN
IKKVISKNPDEFISVMVKDVLENYDSLKDDGATKIATQEKIKTNKYLKFDTVSVDTEIAL
LNEVAKSNQTVEVEQITAETEESLSIVDKVDDITIPEVVVEQEKPAKVVKETNQTSEAKP
KKEKQTTTKNNKKEKPAEKEMKQNQAKPEYINYSPAIDFESQALI
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatactaataaatagcaagagtggcgaagaaacaagaattgccaccctagat
aatggcaaattaatagatttagacattgagagcgttgatagagaacaaaaaaaagcaaat
atttacaaaggttatatttcaagaattgaaccaagtttaaatgctatatttgttaactat
ggtgaagaaaaaaatggttttttaccatttaaagaagtatcagagtattatctaaaagat
gttccaaacggtgaaaatatcgcacctttgctttcagaggggcaagaactaattgttcaa
atagataaagaagaacgaggcgataaaggtgcagcattaactacatttattaccttagct
ggttcgtatatggtgttattgccaaataatcctgaggggggtggtatttcccgtcgtgtc
gaaggtgaagatagagaaagattaaaaaaatatctcaaagaattaaatatcccaaaaaat
atgagcgtaatagcaagaactgcttgcgttgaatgctcttttgaagaattaaaacatgat
tttgatactctagttgaattatggggatctatttcacaagcttaccatagaatcaaaaaa
ccagctttattacataaagaaagtgacattattgtaagaacagttagagatcacttaaaa
gaagatgttaaagaaatcatcgttgattctaaagagtgctttgaagatgtcaaaagacag
cttagtttacttagacaaagttttgatataaacaaagtaaaactatacaacgaagaacta
ccattatttgctcagtttggcattgatcaacaaatagaaaatgcttataaaagagaaatt
cgcctaccatctggcggttctatcgtcatagatactacagaggcacttgtagcaatagat
gtaaactcatctcgcgctaacaaagccgaagatgtagaaactacagcatttaaaactaac
ctagaggctgcggaagaagttgctcgtcaacttagaattagagacttaggtggtcttgtt
atagttgactttattgatatgtctttctacccgaatcgaaaacaagtcgaagaaaaacta
atggaagcactacaacaagatagagcacgcatccaaatgtcacgcatttctaaacttgga
cttgttgagatctcaagacaacgtttaagttcttcaattaatgaaagcgtaatgcaaaaa
tgcccacgttgtgagggtcatggttttatcaaaactacgcaagctacagcacttaccatc
ctacgtaaaatcagagcagaagccattaaagaagataccaacgaaattcgtgtccaagtt
cctgtagacatcgcagcatatatactaaatgaaaaaagagatagtattgttgagattgag
agaatttctcaagttaaggttatgattattcctaactttaatatggaatcgccaaagttt
caaatgcagagaatctggggtactagctacaaatcaaatcgtacaagctcagaattaata
gaagatgtttataatattgaaattcctaaagctggtaagaaaaaaattgcggctgtggat
ttaaatcaagctattgaaaatcaagctgctagcaacactcaagaacaaaagcctcaaact
gatgctcaagtagatatagttacacaaaatgataagaaacaagatgatgtaactcaacaa
gctaagaaaaaaggcttctttgctaggctttttagcggtatatttgcaactgattcaaaa
gctgctcagcaagctaataactcagctcaaaaacaacaaaacaaagaacagaatttccaa
aggcagcaacaacataataaggcgcaaaaagataataatcagcgtaatgagcgtaacaat
aacaacaacaaaaatgagcgcaataaaaatagaaacaataaaggagcaaaaccacaaata
gctcaagaaaataaaccacaaaaagacaatagccagcgtagtgatctcaatgctaatggt
aacagtaacaatgataaaaatgagcgcaataaaaataaatcaaacaatgataagtttgat
aaaaaatcaaataaccgtaacagcagaagcaataatttaaatctaaataatgctgaagaa
gttattgatattacgcaacttaagtatcaaaatcaaacagctattgcaaagacagataat
atcaaaaaggtgatttcgaagaatcctgatgagtttatctctgtaatggttaaagatgtc
ttagaaaactatgatagtctaaaagacgatggtgctacaaagatagctacccaggagaaa
attaaaactaacaaatacttaaagtttgatactgtatctgtagatactgaaatagctcta
cttaatgaagtcgctaaatcaaatcaaactgttgaagttgagcaaatcacagctgaaaca
gaagaatctttaagtatcgttgataaagttgatgacataacaataccagaagttgtagta
gagcaagaaaagccagcgaaagtagttaaagaaactaatcaaactagtgaagctaaacct
aaaaaagaaaagcaaactactacaaaaaataataagaaagaaaaaccagctgaaaaagag
atgaaacaaaatcaagctaaacctgaatatataaactattcaccagcgattgattttgaa
tctcaagcactaatatag
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