Francisella tularensis subsp. holarctica PHIT-FT049: X557_02975
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Entry
X557_02975 CDS
T03033
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
fto
Francisella tularensis subsp. holarctica PHIT-FT049
Pathway
fto03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fto00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
X557_02975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fto03019
]
X557_02975
03016 Transfer RNA biogenesis [BR:
fto03016
]
X557_02975
Enzymes [BR:
fto01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
X557_02975
Messenger RNA biogenesis [BR:
fto03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
X557_02975
Transfer RNA biogenesis [BR:
fto03016
]
Prokaryotic type
tRNA degradation factors
X557_02975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
RNase_II_C_S1
Ras
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
AHH46074
LinkDB
All DBs
Position
534193..536445
Genome browser
AA seq
750 aa
AA seq
DB search
MSKYSIHNDPNKDIEAQKYENPIPSREVILNYIRDVKLPVSIENIANALEIFKKNLFEGL
VNRLGAMVRDGQLEKDRSYYNLPEMAPIYITSKVTADRDSRLELFSHTLNTKVGIVSHQA
KMVMVGDEVTAKVLGLNKRGRIDAEIKTIVTRAQKTVTGYYYKSFDCDFIKPISKSIISD
IVLLPPKQKIEHNSLIEAEIIVYPSISSAAVAKFKQEVEAVSPVKEAMMMTTQKYDLIEQ
WSKKALRYLDNISDDVVVGNRVDLRNQHFVTIDGEDAKDFDDAVYAYKTKSGSWKLYVAI
ADVSNYVEKDSALDLDAKRRSTSVYFPGYVIPMLPEKLSNGLCSLRPNEDRYSLVCEMNI
SKEGKLSRYKFYSAVINSKARLTYTEVAKLLEKKQNTIVENTPELVPNIFDLYELYKVLH
QARQERGAIDFDTVETQIILDEHNHIESIVPRHRNDAHRLIEECMLVANVAAAKFTIKHK
KTSPFRVHSEPKEDRMETLKKYLAKHGIHLAHGKNGKVTPKALAQMLDSIKDRPDYDDIQ
MMTLRSMNQAVYSINNDGHFGLAYSEYTHFTSPIRRYPDLVVHRIIKSIIGEYEHGAADY
KPSELANICENASDQERNADAASKQVENWLKCYFMQDYIGHILEAQIKHVNGLGLFAELK
DMYIEGLIHVSAIPGDYYIYNEAKDILIGKRTHKVYKIGQDITVRVVRADLERIHIDFEL
YDPRKPFAENSSDKPFAKKQKNLKKLKRRK
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
gtgagtaagtacagcatacataatgatccgaataaggatattgaagcgcaaaaatatgaa
aatccaattccaagtagggaagtgattttaaattatataagagatgtaaaacttcctgta
agcattgaaaatatagcaaatgctttagagatttttaaaaaaaatcttttcgaaggtctt
gtaaatcgtttgggtgcaatggttagagatggtcagctagagaaggatagatcatattat
aatttgccggaaatggcgccaatatatatcacatctaaagttactgcagatagagattct
cgtttagagctatttagccatactctaaatacaaaggtaggtatagtatctcatcaagca
aaaatggtaatggttggtgatgaggtaactgcaaaagttcttgggcttaataagcgtggt
cgaatagatgctgaaattaaaaccatagtgacaagagctcagaagacagtcacgggctat
tattataagagctttgattgtgattttattaagccgataagcaaaagcataataagtgac
atagtgctattaccaccaaagcaaaaaatagagcataactctttaatagaagctgagatt
attgtttatcctagtataagtagtgcagctgttgctaaatttaagcaagaggtcgaagca
gtatctccagttaaagaagcgatgatgatgacaacacagaagtatgatttaattgagcag
tggagtaaaaaggctttacgctatttagataatatttctgatgacgtggttgttggcaac
agggttgatctacgtaatcaacactttgtaacaattgatggtgaagatgctaaggatttt
gatgatgcagtttatgcatataagactaaaagtggtagttggaagttatatgtagcaatt
gcagatgtctcaaactatgttgagaaagattcagctttggatttagacgctaagcgtcgt
tctacttcagtgtatttccctggttatgtgataccaatgctaccagagaaattatcaaat
ggtttatgttcattaagaccaaacgaagatagatattccttagtctgtgagatgaatatt
agtaaagaaggtaaactttctaggtataagttttattctgctgtaataaactcaaaggca
cgcttaacttatacagaagttgctaaacttttagaaaagaaacaaaacactatagttgag
aatactcctgagctagtacctaatatatttgatttatacgagttgtataaagtacttcac
caagctaggcaagaacgaggtgctatagactttgatacagttgaaacacagataattctt
gatgagcataatcatattgaatcaattgtgccaagacatcgtaatgatgcacataggctt
attgaagagtgtatgcttgttgctaacgttgcagcagctaagtttactattaagcataaa
aagacatcaccatttagagttcatagtgagcctaaagaagatagaatggaaactcttaag
aagtatcttgctaagcatggtatacatcttgctcatggtaagaatggtaaagtgactccc
aaagctttagcacaaatgctagatagtataaaagatcgtcctgattatgatgatattcag
atgatgactttacgtagtatgaatcaggccgtatatagcataaataatgatggacacttt
ggactagcatatagtgaatatacgcattttacctcaccaattcgtagatatccagattta
gtagtacacagaataataaaatcaattattggtgaatatgaacatggtgctgctgattat
aaaccttctgaattggcaaatatttgtgaaaatgcctctgatcaagagcgaaatgctgat
gcagcctctaagcaagttgagaattggttgaagtgctactttatgcaagactacattggt
catatacttgaagctcaaattaagcatgttaatggtttaggtctttttgctgaactaaaa
gatatgtacatagaaggtctgatacatgtatcagctattcctggtgattactatatttat
aatgaagccaaagatatattaattggtaaacgaacccataaagtctataaaattggtcaa
gatattacagtaagagttgttcgagcagatctcgaaagaattcatatagattttgagctg
tatgatccacgtaagccatttgctgagaatagctcagataagccatttgcaaaaaaacaa
aaaaacttaaaaaagctaaaaagaagaaagtaa
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