Francisella tularensis subsp. holarctica PHIT-FT049: X557_07950
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Entry
X557_07950 CDS
T03033
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
fto
Francisella tularensis subsp. holarctica PHIT-FT049
Pathway
fto03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
fto00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
X557_07950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fto03400
]
X557_07950
Enzymes [BR:
fto01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
X557_07950
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
X557_07950
DNA repair and recombination proteins [BR:
fto03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
X557_07950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
AHH46842
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All DBs
Position
1463294..1464118
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AA seq
274 aa
AA seq
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MPELPEVETVKRGLIKTIIDKKIFDIEINTDKLRYPIDKDQLVKIKNKVVKEIQRRGKHL
IIFIEDDLQLIIHLGMSGIIKVIDSTNYNKIKHDHIVVTLSDNLSLVYNDPRKFGYWLVN
TNHTPLEHRVLVSHGVEPLTADFNSDYLVSKLKQTSRKIKQTIMDNNIVVGVGNIYASEA
LFDSNILPTRASNTITKKEAANLVSSIKKILEKAITQGGTTLKDYKNTEGKPGYFTQQLN
VYGRNEQQCYVCNTKIQSLVIAQRNTFFCKKCQK
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacttcctgaagtagaaacagtaaaaagaggcttaattaaaactattatcgat
aaaaagatatttgatattgagattaataccgataagcttcgctaccctattgataaagac
caattagtaaaaattaaaaataaagtagtcaaagaaatacaacgcagaggtaagcattta
ataattttcattgaagatgatttacaattaattattcacttaggcatgtctggaattatt
aaagttatagactcgacaaactacaataaaatcaaacatgatcacatcgttgtaacgcta
tcagataatctatctttagtttacaatgatccacgtaaatttggttattggttagtaaat
actaatcacacacctcttgaacatagagttttagtatcacatggtgttgaaccactaaca
gctgattttaatagtgactatctagtttctaaacttaagcaaacatcaagaaaaatcaaa
caaacgattatggataataatattgtcgttggtgtgggtaatatatatgctagtgaggcg
ctatttgatagtaatatcctaccaacaagagcttctaatactattaccaaaaaagaagca
gctaacctagtatcatctataaaaaaaatactggaaaaagctattacacaaggtggaacc
actcttaaagattataaaaacaccgagggtaaacccggttattttactcaacaactaaat
gtctatggtagaaatgaacaacaatgttatgtatgtaatacaaaaatacaaagtctagtt
atagctcaaagaaatacttttttttgtaaaaagtgtcagaaataa
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