Francisella tularensis subsp. tularensis SCHU S4 NR-28534: RO31_0737
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Entry
RO31_0737 CDS
T03888
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ftq
Francisella tularensis subsp. tularensis SCHU S4 NR-28534
Pathway
ftq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ftq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RO31_0737 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ftq03400
]
RO31_0737 (mfd)
Enzymes [BR:
ftq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RO31_0737 (mfd)
DNA repair and recombination proteins [BR:
ftq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RO31_0737 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
MFD_D3
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
AAA_22
UB2H
Glyco_tran_WecG
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AKE19863
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All DBs
Position
complement(662917..666342)
Genome browser
AA seq
1141 aa
AA seq
DB search
MLNNQISANDTVVSNAYGSAFSILFNEYLKQNNQFNLIVTEDSQQAHKIYKELKYLNKNN
SKVDILFFPNLEILPYDRFSASIDIISRRQEILYKMTHQPQKTLIITSISNTLRKIAPAS
FIQKHSFILKTGDNLDITKYKMLLTEAGYTLVNNVFEKGEFSIRGSIIDIYPIGSKVAFR
IDLFDNEIDSIKELNTESQRSGNQIQSINIMPSHELVYNNQNTTFALDKLNKLCGDKALN
STIATYIQNNEYFSGIEFYLPLFYDKLSSLYDYLPPSTNIHLVDNITNSIEAFSDEVKFR
YNELKHDSDRPILPFQEIFYSQQEIQDIYQQYKNIKWFQQPKSKSKILKVDHLEKISANY
KLANPFKDLQQFIDKSNFDKVIFSTDSNGRAELLLEHLNKLNLNIQSCKNFNEAIEVSAK
FCLIISPFQEGMIIDKKIALITEADLFPEHGYNSTKVSQHDHHPTVDLKDLTDLKPGMHV
VHIDHGIGRYEGLESIELNGKKDEFILLRYANDAKIYVPITSLNLISIYNSSLTEKIALN
KLGTDKWKKQKEKTIKKIIDVAANLLEIYAKREMRQGFSNSLDEEEYLRFCADFPYEETP
DQLSAINDVFKDMISAKPMDRLICGDVGFGKTEIAMRAAFLATQNQKQVAILVPTTILAQ
QHYNSFKDRFTNTAFNIEVITRSKTPKAQQQLFEDLKKGTIDIIIGTHKLISSKIDFKNL
GLLIIDEEHRFGVAQKEKLKSLKAEIDILTMSATPIPRSLSMAFSALRDLSIIASPPAKR
LSVKTFVKEYDNNIIREAVSRETIRGGQIFYLYNKVETIQKKKEILQELFPRLRIAIAHG
QMSEKEIQKVMFDFKHNKYHILLCTTIIETGIDIPNANTLIIEDANNLGLAQLHQLRGRV
GRSHHQAYAYMLIPNEASITKDALKRLEAISNTESLGGGFTLANHDLEIRGAGEILGEEQ
SGNIDGIGLNLYMDLLDKTIANLRAGKKLNIEEVINSTVCEVELNIPTLIPDYYIYDVNT
RLNIYKRISKASHQDLVNIKIELIDRFGKLPLEVLYLLKVAHIKIDAIALGISQIKMFAT
SGKISFSNNTKFEPQKLIKLIQSQPSDFRLTKEHDLIITKVTKTAEQRIEFIENFLKKIV
Q
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgcttaataaccaaatatctgctaatgatacagttgtatctaatgcttatggatctgct
tttagtattttgtttaatgaatatctcaagcaaaataatcagtttaatttaatagttact
gaagactcacaacaagcacataagatatacaaagaattaaaatatctaaataaaaataat
tcaaaggtagatatcctattttttccaaatttagaaatccttccttatgataggttctca
gcttctatagatattatctctagacgccaagaaatcctatataagatgacacaccaaccc
caaaagactctaataatcacaagtatctcaaatacactaagaaaaatagcaccagcaagt
tttatacaaaagcatagttttatacttaaaacaggtgataacttagatataactaaatat
aaaatgcttcttacagaagcaggttatactttagtaaacaatgtttttgaaaaaggtgag
tttagtattcgtggtagtattattgatatatatcctatcggctcaaaagttgcttttaga
atagatctttttgataatgagattgatagtatcaaagagcttaatactgaaagtcaacgc
tctggtaatcaaatacaatcaatcaacataatgccatctcatgagctggtgtataacaat
caaaatactacttttgctttagataagctcaataaattatgtggtgataaagctcttaat
tcaactattgcgacatatatacaaaataatgaatattttagtggtattgagttttatttg
cctttgttttatgacaaactttctagtctttatgattatctaccaccatcgacaaatatt
cacttagttgataatattactaattcaattgaggctttctctgatgaagtaaaatttaga
tataatgaacttaagcatgatagtgatagaccaattctaccctttcaagaaatcttttac
tcacaacaagaaatacaagatatctaccaacaatataaaaatattaaatggtttcaacag
ccaaaatcaaaatccaaaatacttaaagtagaccatttagaaaaaatttcagcaaactac
aaacttgcaaatccattcaaagatttacaacagtttattgataaatctaattttgacaaa
gttattttctcaactgactcaaatgggcgtgctgaactacttctagagcacttaaataag
cttaatctaaatatacaaagctgtaaaaattttaatgaagctatagaagtatctgctaag
ttctgcttaataatttcgccttttcaagaaggtatgattatagacaaaaaaattgctcta
attacagaagcagatttatttcctgaacatggctataactctaccaaagtttcacagcat
gatcaccaccctactgttgatcttaaagatcttacagatctaaaaccaggaatgcatgtt
gtgcatattgatcatggtatcggtagatatgaaggtttagaaagtattgagctaaatggt
aaaaaagatgagtttatattactaagatatgcaaatgatgccaaaatctatgtaccaatc
acatcactaaatctaatctctatttataactcttcacttactgaaaagatagcattaaat
aagcttggtacagataagtggaaaaaacaaaaagaaaaaactattaaaaagattattgat
gtagcagcaaatcttctcgaaatttatgcaaaaagagaaatgcgccaaggttttagcaat
agcttagacgaagaagaataccttagattttgcgcagactttccttatgaggaaactcct
gatcaactttcagctattaatgatgtatttaaagatatgatttcagctaaacctatggat
aggctaatctgtggtgatgtaggttttggtaaaacagagattgcgatgcgagcagcattc
cttgccacacaaaatcaaaaacaagttgctattttagtacctacaacaatcttagctcaa
cagcattataatagctttaaagatagatttactaacactgcttttaatatcgaagtaatt
acccgttcaaaaactccaaaggcacagcaacaactttttgaagaccttaaaaaaggaacc
atagacataattatcggcactcataaactaatttcatcaaaaattgactttaaaaattta
ggtttattaattattgatgaagaacatcgttttggtgtcgctcaaaaggaaaaactaaaa
tcattaaaagccgagatagatattttaactatgtctgcaacacctattccgcgtagttta
agtatggcgttttcagcactaagagacttatcaattatcgcttcaccacctgccaaacgc
ttatcagttaaaacttttgtcaaagaatatgataataatataatccgcgaagctgtaagt
cgtgaaactattcgtggtggacagattttttatctttataataaagttgaaactattcaa
aagaaaaaagaaattcttcaagagttgtttccacgcttacgtatagctatagctcatgga
caaatgagcgaaaaagaaatccaaaaagttatgtttgattttaaacataacaagtaccat
atattactatgtaccacaattattgagacaggtattgatataccaaatgctaatactcta
attattgaagatgctaacaatctaggtttagctcaacttcaccaactaagaggtagagtt
ggtcgatcacatcatcaagcttatgcatatatgctaataccaaatgaagcaagcattacc
aaagatgcactaaaaaggcttgaggctattagtaataccgaatcattaggtggtggtttt
actttagctaatcatgatttagagattcgtggcgctggtgaaatacttggagaagagcaa
agtggtaatattgatggtattggtctaaatctatatatggatctactcgataaaacaatt
gcaaatctacgagctggtaaaaagctcaatatcgaagaggttattaattctacagtctgc
gaagttgagttaaatattccaacactaattcccgattattatatttatgatgtcaacact
cgactaaacatctataaacgaatttcaaaagctagtcatcaagatttagtaaatatcaaa
attgaacttatagatcgctttggcaaattacctttagaagttctttatttacttaaagta
gcacatataaaaatagatgcgattgcattaggaatttcccaaataaaaatgtttgctaca
tctggcaaaattagtttctcaaacaatacaaaatttgaaccacagaagctgataaaactt
attcaatcacaacctagtgattttagactgactaaagagcatgatttaattataacaaaa
gttacaaaaactgctgaacaaagaatagagtttatcgaaaactttttgaagaaaatagtt
caataa
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