Francisella tularensis subsp. tularensis NE061598: NE061598_08220
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Entry
NE061598_08220 CDS
T01938
Name
(GenBank) Cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ftr
Francisella tularensis subsp. tularensis NE061598
Pathway
ftr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ftr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NE061598_08220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ftr03019
]
NE061598_08220
03009 Ribosome biogenesis [BR:
ftr03009
]
NE061598_08220
Enzymes [BR:
ftr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NE061598_08220
Messenger RNA biogenesis [BR:
ftr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NE061598_08220
Ribosome biogenesis [BR:
ftr03009
]
Prokaryotic type
rRNA helicases
NE061598_08220
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_30
Utp25_C
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ADA79115
LinkDB
All DBs
Position
complement(1455284..1456993)
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AA seq
569 aa
AA seq
DB search
MNSETKKDFSQLGLNQDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAA
FALPLINNMDLASRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGS
QIRALKQGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHV
SEQCQRLLFSATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALD
RLLETEETDGVIIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSD
ILVATDVVARGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFL
RTLERFTGSPMQEVFMPSAKELAQSRVEHFKARIISALDKNKSLDKYKEIITSIRDELQL
DSEELLAGLTLLAQGKKTFFPKEIQAKEEKPARDNRNSRDGRRNERFERRNDQGDRTKRF
DKADRKPRRAVNIDLTTYKLDVGRDNDVQARNIVGAIANEGNIDSKHICNISIQKDYTLV
DLPANLSPKVINHLKKVWVAGKKLNLTAQ
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgaattctgaaactaaaaaagattttagtcagcttgggctgaatcaagatattgtagat
actgttattaaactaggatatgaaaatccaacacctatccaacagtatgctattccatat
atcttatcgggtagagatgtgctaggtcaagcacaaacgggtacgggcaaaacagcagct
tttgcattacctctaataaataacatggacttggcatctagagatagagctccacaagtt
ttggtactagcacctacaagagagttagctatacaagtggcggagcagtttgaagctttt
gctaaaaatgtacctaatttagatgttgcttgtatttatggtggtcaagaatatggttct
caaataagagcacttaagcaaggtgtaaaagttgtagttggtacaactggtcgagtaatg
gatcatattgagaaaggtacattacagcttgataatcttagagcattagtattagatgaa
gcagatgagatgctcagaatgggctttattgatgatgttaaatttgtcttaagtcatgtt
tctgaacaatgccaaagattacttttctcagcaacaattcctactgatattgctgatatt
atcgaagaatatctaagaaatccttgtaagatacaagtgaaagcgaaaacaaaaactgct
aatacagtgacacaaaaatttatcgtcattaaaggctttagaaagatagatgctttagat
aggttgcttgagaccgaagaaactgacggtgttattatctttgttaagactaagacaagt
actatagaagtagcagataatttaaaagctcttggctataaagtagcagctataaatggc
gatatgcaacaatcacagcgtgagtatattgttgatcaattcagaagtgctaaatccgat
atcctcgttgctacagatgtagtagctaggggtatagatcttgaacgtattagtcatgtg
attaactatgatatgcctaatgatactgatacatatgtacatagaattgggcgtacaggt
agagcagggcgtgaaggcacgtcaatttctttagtacctcttaaagagatgagattttta
cgtactttagagagatttacaggttcaccaatgcaagaagtatttatgccaagtgctaaa
gagttagctcaaagcagggtagaacactttaaagctagaataatctcagcattggataaa
aataagtctttagataagtataaagaaattattacaagtattcgtgatgaattacagtta
gactcagaagagcttttagctggacttacattactagctcaaggtaagaaaactttcttc
ccaaaagaaattcaagctaaagaagaaaaaccagctcgtgataatagaaattctagagat
ggtagaagaaatgaaagatttgagcgtagaaatgatcaaggtgatagaactaaacgtttt
gataaagcagatagaaagccacgtcgtgctgtaaatatcgatctaactacttataagtta
gatgttggtcgtgataatgatgttcaagcacgaaatattgttggtgctatagctaatgag
ggtaatatcgatagtaaacatatctgtaatatctctattcaaaaagattatacattagtt
gatttaccagcaaatctttcaccaaaagtgataaatcatctaaaaaaagtttgggttgct
gggaagaagttaaatcttactgctcagtaa
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