Francisella tularensis subsp. holarctica F92: F92_08540
Help
Entry
F92_08540 CDS
T02349
Name
(GenBank) formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
fts
Francisella tularensis subsp. holarctica F92
Pathway
fts03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
fts00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
F92_08540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fts03400
]
F92_08540
Enzymes [BR:
fts01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
F92_08540
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
F92_08540
DNA repair and recombination proteins [BR:
fts03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
F92_08540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
AFX71169
LinkDB
All DBs
Position
1464842..1465666
Genome browser
AA seq
274 aa
AA seq
DB search
MPELPEVETVKRGLIKTIIDKKIFDIEINTDKLRYPIDKDQLVKIKNKVVKEIQRRGKHL
IIFIKDDLQLIIHLGMSGIIKVIDSTNYNKIKHDHIVVTLSDNLSLVYNDPRKFGYWLVN
TNHTPLEHRVLVSHGVEPLTADFNSDYLVSKLKQTSRKIKQTIMDNNIVVGVGNIYASEA
LFDSNILPTRASNTITKKEAANLVSSIKKILEKAITQGGTTLKDYKNTEGKPGYFTQQLN
VYGRNEQQCYVCNTKIQSLVIAQRNTFFCKKCQK
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacttcctgaagtagaaacagtaaaaagaggcttaattaaaactattatcgat
aaaaagatatttgatattgagattaataccgataagcttcgctaccctattgataaagac
caattagtaaaaattaaaaataaagtagtcaaagaaatacaacgcagaggtaagcattta
ataattttcattaaagatgatttacaattaattattcacttaggcatgtctggaattatt
aaagttatagactcaacaaactacaataaaatcaaacatgatcacatcgttgtaacgcta
tcagataatctatctttagtttacaatgatccacgtaaatttggttattggttagtaaat
actaatcacacacctcttgaacatagagttttagtatcacatggtgttgaaccactaaca
gctgattttaatagtgactatctagtttctaaacttaagcaaacatcaagaaaaatcaaa
caaacgattatggataataatattgtcgttggtgtgggtaatatatatgctagtgaggcg
ctatttgatagtaatatcctaccaacaagagcttctaatactattaccaaaaaagaagca
gctaacctagtatcatctataaaaaaaatactggaaaaagctattacacaaggtggaacc
actcttaaagattataaaaacaccgagggtaaacccggttattttactcaacaactaaat
gtctatggtagaaatgaacaacaatgttatgtatgtaatacaaaaatacaaagtctagtt
atagctcaaagaaatacttttttttgtaaaaagtgtcagaaataa
DBGET
integrated database retrieval system
