Francisella tularensis subsp. tularensis TI0902: FTV_1454
Help
Entry
FTV_1454 CDS
T01761
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ftt
Francisella tularensis subsp. tularensis TI0902
Brite
KEGG Orthology (KO) [BR:
ftt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ftt03019
]
FTV_1454 (hrpA)
Enzymes [BR:
ftt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FTV_1454 (hrpA)
Messenger RNA biogenesis [BR:
ftt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FTV_1454 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
HA2_N
RsgA_GTPase
nSTAND3
AAA_19
T2SSE
NACHT
ABC_tran
NTPase_1
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AFB81089
LinkDB
All DBs
Position
complement(1577005..1581273)
Genome browser
AA seq
1422 aa
AA seq
DB search
MSIHIDAFLNQIPTKFRGKFISVINNKNLPNQQLLEQLQVLAEQTKQKILPKITYPDLPV
AERVDDIKKLLQDNQVIVVAGETGSGKSTQLPKICLDLGLGKRGLIGHTQPRRLAARSIA
SRIASEIGDQSKVSFKIRFSDQTSENTLIKVMTDGVLLSEIKNDRFLSQYEVIIIDEAHE
RSLNIDFLIGCIKKILPFRPDLKVIITSATIDHQKFINFFQNAKDIIISGRTYPVEIRYQ
NDEDFDEFSLQERILYALDELGRGDVLVFLPTERDIHETLAYLNKQNLRFTEVLPLFSRL
SNKDQNKIFNPEGSVRRVILATNVAETSLTVPRIKYVIDSGLARISRYSYRTKVQRLPIE
KISQASANQRAGRCGRLSAGICIRLYSEEDFNNRKEYTEPEILRTNLASVILQMLFLKLG
SIQDFPFIDAPDARFVKDGFKLLFELQAISELNYSKPKITDDGMKMAVMPLDPKLAKIVI
EGYRQKTLREIVSIVSFLSVQDPRERPLNLQQKADEKHSVDKDKSSDFVAILNLANRLNS
DLKGLSNREKKEYFKKNFISPVRFNEWNDIYRQIIEVIHGFGWKLNSQLVIKKDSGHSGL
DPESFEHIGKSHDNEILKQVHNDRQILTNSSNIKINRHSHESANLIANDQNLKDTRLHVY
DNGSAMINYENLHKAIASGFLSNIGYNYENAEYLGARGLKFFIFPGSSQFKAKPKWLLSS
EIVETTKTYARNVAKIEPEWLESLASHLVKKHYDEPVWSKKRRAVIVNERVTLYGLEIVS
KRVVQYSKINPREAREIFIREALVKGNFDSKTYFYQQNLKLINQVEDLENKSRRKDILVD
EQTMFEHYDAFIPDEVCDGATFDKWLKTVRKAQQQKFIFGLESLMQHGAKEITQQKFPDV
LTIGDMHLPLEYNFDPLDERDGATVTVPIVFINNISSAVLEWGVYGFLYDKIVALLRALP
KNIRKNCVPVPTYAQAIFESLDFDKDRYTPLKSVIAKHITRIVGFVVDETVWQNEELEKY
LVLNIKVVDEHGKTLALGKDINTLKQKLKNLVNKPKQAVDEKIYYDWDFANIALTNQIKE
YGIVVKVYNCLEEYKGGVKLSYKATLAEAQSCMKRALKKLIKIRLQNQLSQKIKNNDLTS
LSVSLKLSDSKDNVVDKAIDLSFFDDVISSDLSTEFKKQNSSRNYYENGNLTVNLRNQRD
NRFDRHDNKSVITDCDQESSILKHDSKSSETMFSDYAQQSVQDDSNVNLAGLPYTKSDFE
QFFKAGISSFVANKTKVELLFTEILRAKEQLDKKLNIKKIPLNFIELFTAVRNELNELFT
DNYLSQPMIYLQRYKYYIQALENRLDKAKLNLQRDRNYQLEADELKAKLAKKLVTKHLST
GDEEVTKIRFLIKELWISWYLQNIKTSESVSVKKILVYINQI
NT seq
4269 nt
NT seq
+upstream
nt +downstream
nt
atgtctatccatattgatgcttttcttaatcaaatacccaccaagtttcgtggtaaattt
atatctgtaataaacaataaaaatcttccaaaccagcagctacttgagcagctacaagta
ttagctgagcaaactaaacaaaagatcttacctaaaataacctatccagatctacctgtt
gctgaaagagtcgatgatataaaaaagcttctccaagataatcaagttatagttgtagca
ggtgaaactggctctggtaaatcaacccagcttcctaaaatctgtctagatttaggactg
ggtaagcgtggattaattggacacactcaacctagaagacttgcggctagatctattgct
agtagaattgctagtgaaataggtgatcagtcaaaagtatcttttaaaattcgtttttct
gatcaaacatctgaaaatactttaataaaagtaatgaccgatggggtattactgtctgaa
atcaagaatgatagatttttgtcgcagtatgaggttattatcattgatgaggctcatgaa
agaagcttaaatattgattttctaattggctgtataaaaaagattttaccatttagacct
gatttaaaagtaattattacttcagcaaccatagatcatcaaaaatttataaattttttt
caaaatgctaaagatattataattagtggtagaacatatcctgttgaaattcgctatcaa
aatgatgaagattttgatgagttctcattacaagaaagaatattatatgctcttgatgag
cttggtcgaggagatgttttagtttttttaccaaccgaaagagatattcatgaaacatta
gcatatttgaacaagcaaaatcttagatttacagaagttttacctttattttcaaggtta
tcaaataaggatcaaaataaaatttttaaccctgaaggttctgtgcgtagagttatttta
gcgacaaatgttgcggaaacatctttgacagtaccacgtataaagtatgttatagattca
ggtctggcgcgaataagtagatacagttatcgtactaaggtgcaacgcctaccaatagaa
aaaatctctcaagcaagcgccaatcaaagagcaggtcgctgtggtaggttatctgctggt
atctgtatacgcctttatagtgaggaagactttaataatcgtaaagagtacacggagcct
gaaattttacgtactaatttggcatcggttattttacagatgttatttctgaaattagga
agtattcaagattttccatttattgatgctcctgatgcaaggtttgtaaaagatggtttt
aaacttttatttgagttacaagctatttcagaacttaattattcaaagcctaaaattact
gatgatgggatgaaaatggcagttatgccattagatcctaagttggcaaaaatagttatt
gagggttacagacaaaagactcttagagaaatagtttcgattgttagtttcttgagtgta
caagatcctagagaaagacctttgaacctccagcaaaaggcagatgaaaaacactcagta
gataaagataaatcttctgattttgttgcaatattgaatttggcaaatagactaaattct
gatttaaagggtttatcaaatagagaaaaaaaagaatatttcaaaaagaactttatttcg
ccagttagatttaacgaatggaatgatatttatcgacaaattattgaggtcattcatgga
tttggttggaagctaaatagtcaacttgtaataaaaaaagatagtggtcattccggactt
gatccagaatcttttgagcatataggcaaaagccatgataatgagattttgaaacaagtt
cataatgataggcagattttaacaaatagttcaaatattaaaattaatcgtcattcccac
gaaagtgcgaatctcatagctaatgatcaaaatttaaaagatacccgtctgcacgtgtat
gacaatggtagcgccatgataaactatgaaaacctacataaagccatagccagtgggttt
cttagtaatattggttataactatgaaaatgcagagtatctaggagctagaggacttaag
ttttttatctttcctggatcttcacagtttaaggcaaagccaaagtggttactttcatcc
gaaatagttgaaactactaaaacatatgctcgaaatgttgcaaagattgagcctgagtgg
ttagagagtttggcaagccaccttgtcaaaaaacactatgatgagcctgtgtggagtaaa
aaacgtagagctgtaatagtaaatgaaagggtaacattgtacggcttagagatagtttca
aaaagagtagtgcaatactcaaagataaatcctcgagaggctcgagagatttttattcga
gaagctttagtaaagggtaattttgactctaaaacatatttttatcaacaaaatctcaag
cttataaatcaagttgaagatcttgaaaataaatcacgtcgaaaagatatcttggtagat
gagcagacgatgtttgagcattatgatgcttttattccggatgaggtttgtgatggcgca
acatttgataaatggctaaaaacagttagaaaagctcaacaacaaaagtttatttttggc
ttagaaagcttaatgcaacatggtgctaaagagattacgcaacaaaagtttccagatgtt
ttaactattggagatatgcacttaccattagaatacaactttgatccactagatgagcga
gatggtgcaactgttacagtaccgatagtttttatcaataacattagttccgcagtgtta
gagtggggggtgtatggtttcttgtatgataagatcgttgctttattgcgagcattgccg
aaaaatatccgtaaaaactgtgtaccggtgccaacttatgctcaagctatatttgagtcg
ctagattttgataaagatagatatactcctttaaaatctgtcattgctaaacatattacg
cgtattgttggattcgtagttgatgagacagtatggcagaatgaagagttagagaaatat
ttagttttaaatataaaagttgttgatgagcatggtaaaacacttgcgctgggtaaagat
atcaatactttaaaacaaaagctcaaaaacctagttaataaacctaagcaagcagtcgat
gagaaaatttattatgattgggattttgctaatattgctttgaccaatcaaattaaagag
tacggtatagtagtcaaagtatacaattgtcttgaggaatataaaggtggtgtgaaactg
tcatataaagcaactttagcagaagcacagtcttgtatgaaaagggctttgaagaaactt
attaagatacgtctacaaaatcaattatcgcaaaaaatcaaaaataatgatttaacaagt
ctatcagtgtcgttaaaacttagtgattcaaaagataatgtggttgataaagctatagat
ttaagcttttttgatgatgtcatttcgtcagacttgtctactgaatttaagaaacaaaat
agtagtcgtaattactacgaaaatgggaatctcacagttaatcttagaaaccaaagagat
aatcgttttgacaggcatgacaacaaatctgtcattactgactgtgatcaggaatcttct
atacttaagcatgatagtaaaagtagtgagaccatgttctccgactatgctcagcaatcg
gttcaggatgatagtaatgtaaatttagccggtttaccatacaccaaaagtgattttgag
cagttttttaaagctggtataagtagttttgtagctaataaaactaaggttgaactacta
tttacagagatactcagagcaaaagagcaacttgataagaagctcaatattaagaaaatc
ccacttaattttatcgaactttttacagctgttagaaatgagctaaatgagctttttact
gacaattatttatcacaacctatgatttacttgcagcgatataagtattatattcaagct
ttagaaaaccgattagataaggcaaaactaaatctgcaaagagataggaactatcaatta
gaggctgatgagcttaaagctaaactagctaaaaagcttgttactaaacatcttagcact
ggcgatgaagaagtaaccaaaattcgctttctgataaaagagttatggatatcttggtat
ttacaaaatataaaaactagtgaatcagtttcggttaagaagattctagtttatattaac
cagatatag
DBGET
integrated database retrieval system
