Francisella tularensis subsp. tularensis SCHU S4: FTT_1553c
Help
Entry
FTT_1553c CDS
T00214
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ftu
Francisella tularensis subsp. tularensis SCHU S4
Pathway
ftu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ftu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FTT_1553c (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ftu03019
]
FTT_1553c (rnr)
03016 Transfer RNA biogenesis [BR:
ftu03016
]
FTT_1553c (rnr)
Enzymes [BR:
ftu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FTT_1553c (rnr)
Messenger RNA biogenesis [BR:
ftu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FTT_1553c (rnr)
Transfer RNA biogenesis [BR:
ftu03016
]
Prokaryotic type
tRNA degradation factors
FTT_1553c (rnr)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
S1
OB_PDCD11
RNase_II_C_S1
Ras
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
CAG46186
UniProt:
Q5NER5
LinkDB
All DBs
Position
complement(1613990..1616287)
Genome browser
AA seq
765 aa
AA seq
DB search
MSKYSIHNDPNKDIEAQKYENPIPSREVILNYIRDVKLPVSIENIANALEIFKKNLFEGL
VNRLGAMVRDGQLEKDRSYYNLPEMAPIYITSKVTADRDSRLELFSHTLNTKVGIVSHQA
KMVMVGDEVTAKVLGLNKRGRIDAEIKTIVTRAQKTVTGYYYKSFDCDFIKPISKSIISD
IVLLPPKQKIEHNSLIEAEIIVYPSISSAAVAKFKQEVEAVSPVKEAMMMTTQKYDLIEQ
WSKKALRYLDNISDDVVVGNRVDLRNQHFVTIDGEDAKDFDDAVYAHKTKSGSWKLYVAI
ADVSNYVEKDSALDLDAKRRSTSVYFPGYVIPMLPEKLSNGLCSLRPNEDRYSLVCEMNI
SKEGKLSRYKFYSAVINSKARLTYTEVAKLLEKKQNTIVENTPELVPNIFDLYELYKVLH
QARQERGAIDFDTVETQIILDEHNHIESIVPRHRNDAHRLIEECMLVANVAAAKFTIKHK
KTSPFRVHSEPKEDRMETLKKYLAKHGIHLAHGKNGKVTPKALAQMLDSIKDRPDYDDIQ
MMTLRSMNQAVYSINNDGHFGLAYSEYTHFTSPIRRYPDLVVHRIIKSIIGEYEHGAADY
KPSELANICENASDQERNADAASKQVENWLKCYFMQDYIGHILEAQIKHVNGLGLFAELK
DMYIEGLIHVSAIPGDYYIYDEAKDILIGKRTHKVYKIGQDITVRVVRADLERIHIDFEL
YDPRKPFAENSSDKPFAKKTKKLKKAKKKKVRSRKKNKTKAKLAH
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
gtgagtaagtacagcatacataatgatccgaataaggatattgaagcgcaaaaatatgaa
aatccaattccaagtagggaagtgattttaaattatataagagatgtaaaacttcctgta
agcattgaaaatatagcaaatgctttagagatttttaaaaaaaatcttttcgaaggtctt
gtaaatcgtttgggtgcaatggttagagatggtcagctagagaaggatagatcatattat
aatttgccggaaatggcgccaatatatatcacatctaaagttactgcagatagagattct
cgtttagagctatttagccatactctaaatacaaaggtaggtatagtatctcatcaagca
aaaatggtaatggttggtgatgaggtaactgcaaaagttcttgggcttaataagcgtggt
cgaatagatgctgaaattaaaaccatagtgacaagagctcagaagacagtcacgggctat
tattataagagctttgattgtgattttattaagccgataagcaaaagcataataagtgac
atagtgctattaccaccaaagcaaaaaatagagcataactctttaatagaagctgagatt
attgtttatcctagtataagtagtgcagctgttgctaaatttaagcaagaggtcgaagca
gtatctccagttaaagaagcgatgatgatgacaacacagaagtatgatttaattgagcag
tggagtaaaaaggctttacgctatttagataatatttctgatgacgtggttgttggcaac
agggttgatctacgtaatcaacactttgtaacaattgatggtgaagatgctaaggatttt
gatgatgcagtttatgcacataagactaaaagtggtagttggaagttatatgtagcaatt
gcagatgtctcaaactatgttgagaaagattcagctttggatttagacgctaagcgtcgt
tctacttcagtgtatttccctggttatgtgataccaatgctaccagagaaattatcaaat
ggtttatgttcattaagaccaaacgaagatagatattccttagtctgtgagatgaatatt
agtaaagaaggtaaactttctaggtataagttttattctgctgtaataaactcaaaggca
cgcttaacttatacagaagttgctaaacttttagaaaagaaacaaaacactatagttgag
aatactcctgagctagtacctaatatatttgatttatacgagttgtataaagtacttcac
caagctaggcaagaacgaggtgctatagactttgatacagttgaaacacagataattctt
gatgagcataatcatattgaatcaattgtgccaaggcatcgtaatgatgcacataggctt
attgaagagtgtatgcttgttgctaacgttgcagcagctaagtttactattaagcataaa
aagacatcaccatttagagttcatagtgagcctaaagaagatagaatggaaactcttaag
aagtatcttgctaagcatggtatacatcttgctcatggtaagaatggtaaagtgactccc
aaagctttagcacaaatgctagatagtataaaagatcgtcctgattatgatgatattcag
atgatgactttacgtagtatgaatcaggccgtatatagcataaataatgatggacacttt
ggactagcatatagtgaatatacgcattttacctcaccaattcgtagatatccagattta
gtagtacacagaataataaaatcaattattggtgaatatgaacatggtgctgctgattat
aaaccttctgaattggcaaatatttgtgaaaatgcctctgatcaagagcgaaatgctgat
gcagcctctaagcaagttgagaattggttgaagtgctactttatgcaagactacattggt
catatacttgaagctcaaattaagcatgttaatggtttaggtctttttgctgaactaaaa
gatatgtacatagaaggtctgatacatgtatcagctattcctggtgattactatatttat
gatgaagccaaagatatattaattggtaaacgaacccataaagtctataaaattggtcaa
gatattacagtaagagttgttcgagcagatctcgaaagaattcatatagattttgagctg
tatgatccacgtaagccatttgctgagaatagctcagataagccatttgcaaaaaaaaca
aaaaaacttaaaaaagctaaaaagaagaaagtaagaagtagaaaaaagaataaaacaaaa
gcaaaattagcacactaa
DBGET
integrated database retrieval system
