Francisella tularensis subsp. holarctica VT68: CH67_1041
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Entry
CH67_1041 CDS
T03714
Name
(GenBank) ribonuclease, Rne/Rng family domain protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ftv
Francisella tularensis subsp. holarctica VT68
Pathway
ftv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ftv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CH67_1041
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ftv03019
]
CH67_1041
03009 Ribosome biogenesis [BR:
ftv03009
]
CH67_1041
Enzymes [BR:
ftv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CH67_1041
Messenger RNA biogenesis [BR:
ftv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CH67_1041
Ribosome biogenesis [BR:
ftv03009
]
Prokaryotic type
rRNA processing factors
CH67_1041
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Antiterm
DnaJ_CXXCXGXG
Flu_C_NS1
Motif
Other DBs
NCBI-ProteinID:
AJI64085
UniProt:
A0A0B6DSQ6
LinkDB
All DBs
Position
complement(934100..936631)
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AA seq
843 aa
AA seq
DB search
MKRILINSKSGEETRIATLDNGKLIDLDIESVDREQKKANIYKGYISRIEPSLNAIFVNY
GEEKNGFLPFKEVSEYYLKDVPNGENIAPLLSEGQELIVQIDKEERGDKGAALTTFITLA
GSYMVLLPNNPEGGGISRRVEGEDRERLKKYLKELNIPKNMSVIARTACVECSFEELKHD
FDTLVELWGSISQAYHRIKKPALLHKESDIIVRTVRDHLKEDVKEIIVDSKECFEDVKRQ
LILLRQSFDINKVKLYNEELPLFAQFGIDQQIENAYKREIRLPSGGSIVIDTTEALVAID
VNSSRANKAEDVETTAFKTNLEAAEEVARQLRIRDLGGLVIVDFIDMSFYPNRKQVEEKL
MEALQQDRARIQMSRISKLGLVEISRQRLSSSINESVMQKCPRCEGHGFIKTTQATALTI
LRKIRAEAIKEDTNEIRVQVPVDIAAYILNEKRDSIVEIERISQVKVMIIPNFNMESPKF
QMQRIWGTSYKSNRTSSELIEDVYNIEIPKAGKKKIAAVDLNQAIENQAASNTQEQKPQT
DAQVDIVTQNDKKQDDVTQQAKKKGFFARLFSGIFATDSKAAQQANNSAQKQQNKEQNFQ
RQQQHNKAQKDNNQRNERNNSNNKNERNKNKSNNDKFDKKSNNRNSRSNNLNLNNAEEVI
DITQLKYQNQTAIAKTDNIKKVISKNPDEFISVMVKDVLENYDSLKDNGATKIATQEKIK
TNKYLKFDTVSVDTEIALLNEVAKSNQTVGVEQITAETEESLSIVDKVDDITIPEVVVEQ
EKPAKVVKETNQTSEAKPKKEKQTTTKNNKKEKPAEKEMKQNQAKPEYINYSPAIDFESQ
ALI
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatactaataaatagcaagagtggcgaagaaacaagaattgccaccctagat
aatggcaaattaatagatttagacattgagagcgttgatagagaacaaaaaaaagcaaat
atttacaaaggttatatttcaagaattgaaccaagtttaaatgctatatttgttaactat
ggtgaagaaaaaaatggttttttaccatttaaagaagtatcagagtattatctaaaagat
gttccaaacggtgaaaatatcgcacctttgctttcagaggggcaagaactaattgttcaa
atagataaagaagaacgaggcgataaaggtgcagcattaactacatttattaccttggct
ggttcgtatatggtattattgccaaataatcctgaggggggtggtatttcccgtcgtgtc
gaaggtgaagatagagaaagattaaaaaaatatctcaaagaattaaatatcccaaaaaat
atgagcgtaatagcaagaactgcttgcgttgagtgctcttttgaagaattaaaacatgat
tttgatactctagttgaattatggggatctatttcacaagcttaccatagaatcaaaaaa
ccagctttattacataaagaaagtgacattattgtaagaacagttagagatcacttaaaa
gaagatgttaaagaaatcatcgttgattctaaagagtgctttgaagatgtcaaaagacag
cttattttacttaggcaaagttttgatataaacaaagtaaaactatacaacgaagaatta
ccattatttgctcagtttggtattgatcaacaaatagaaaatgcttataaaagagaaatt
cgcctaccatctggcggttctatcgtcatagatactacagaggcacttgtagcaatagat
gtaaactcatctcgcgctaacaaagccgaagatgtagaaactacagcatttaaaactaac
ctagaggctgcggaagaagttgctcgtcaacttagaattagagacttaggtggtcttgtt
atagttgactttattgatatgtctttctacccgaatcgaaaacaagtcgaagaaaaacta
atggaagcactacaacaagatagagcacgcatccaaatgtcacgcatttctaaacttgga
cttgttgagatctcaagacaacgtttaagttcttcaattaatgaaagcgtaatgcaaaaa
tgcccacgttgtgagggtcatggttttatcaaaactacgcaagctacagcacttaccatc
ctacgtaaaatcagagcagaagccattaaagaagataccaacgaaattcgtgtccaagtt
cctgtagacatcgcagcatatatactaaatgaaaaaagagatagtattgttgagattgag
agaatttctcaagttaaggttatgattattcctaactttaatatggaatcgccaaagttt
caaatgcagagaatctggggtactagctacaaatcaaatcgtacaagctcagaattaata
gaagatgtttataatattgaaattcctaaagctggtaagaaaaaaattgcggctgtggat
ttaaatcaagctattgaaaatcaagctgctagcaacactcaagaacaaaagcctcaaact
gatgctcaagtagatatagttacacaaaatgataagaaacaagatgatgtaactcaacaa
gctaagaaaaaaggcttctttgctaggctttttagcggtatatttgcaactgattcaaaa
gctgctcagcaagctaataactcagctcaaaaacaacaaaacaaagaacagaatttccaa
aggcagcaacaacataataaggcgcaaaaagataataatcaacgtaatgagcgtaacaat
agcaacaacaaaaatgagcgcaataaaaataaatcaaacaatgataagtttgataaaaaa
tcaaataaccgtaacagcagaagcaataatttaaatctaaataatgctgaagaagttatt
gatattacgcaacttaagtatcaaaatcaaacagctattgcaaagacagataatatcaaa
aaggtgatttcgaagaatcctgatgagtttatctctgtaatggttaaagatgtcttagaa
aactatgatagtctaaaagacaatggtgctacaaagatagctacccaggagaaaattaaa
actaacaaatacttaaagtttgatactgtatctgtagatactgaaatagctctacttaat
gaagtcgctaaatcaaatcaaactgttggagttgagcaaatcacagctgaaacagaagaa
tctttaagtatcgttgataaagttgatgacataacaataccagaagttgtagtagagcaa
gaaaagccagcgaaagtagttaaagaaactaatcaaactagtgaagctaaacctaaaaaa
gaaaagcaaactactacaaaaaataataagaaagaaaaaccagctgaaaaagagatgaaa
caaaatcaagctaaacctgaatatataaactattcaccagcgattgattttgaatctcaa
gcactaatatag
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