Francisella tularensis subsp. novicida U112: AW25_1334
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Entry
AW25_1334 CDS
T03874
Name
(GenBank) hypothetical protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ftx
Francisella tularensis subsp. novicida U112
Pathway
ftx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ftx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AW25_1334
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ftx03019
]
AW25_1334
03009 Ribosome biogenesis [BR:
ftx03009
]
AW25_1334
Enzymes [BR:
ftx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AW25_1334
Messenger RNA biogenesis [BR:
ftx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AW25_1334
Ribosome biogenesis [BR:
ftx03009
]
Prokaryotic type
rRNA helicases
AW25_1334
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Utp25_C
AAA_30
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AJI60348
UniProt:
A0Q5R7
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All DBs
Position
complement(1395461..1397170)
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AA seq
569 aa
AA seq
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MNSETKKDFSQLGLNQDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAA
FALPLINNMDLASRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGS
QIRALKQGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHV
SDECQRLLFSATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALD
RLLETEETDGVIIFVKTKTSTIEVTDNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSD
ILVATDVVARGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFL
RTLERFTGSPMQEVFMPSAKDLAQSRVEHFKARIISALDKNKSLDKYKEIITSIRDELQL
DSEELLAGLTLLAQGKKTFFPREIQAKEEKPARDNRNSRDGRRNERFERRNDQGDRTKRF
DKADRKPRRAVNIDLTTYKLDVGRDNDVQARNIVGAIANEGNIDSKHICNISIQKDYTLV
DLPANLSPKVINHLKKVWVAGKKLNLTVQ
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgaattctgaaactaaaaaagattttagtcagcttgggctgaatcaagatattgtagat
actgttattaaactaggatatgaaaatccaacacctatccaacagtatgctattccatat
atcttatcgggtagagatgtgctaggtcaagcacaaacgggtacgggtaaaacagcagct
tttgcattacctctaataaacaacatggacttggcatctagagatagagctccacaagtt
ttggtactagcacctacaagagagttagctatacaagtggcggagcagtttgaagctttt
gctaaaaatgtacctaatttagatgttgcttgtatttatggtggtcaagaatatggttct
caaataagagcacttaagcaaggtgtaaaagttgtagttggtacgactggtcgagtaatg
gatcatattgagaaaggtacattacagcttgataatcttagagcattagtactagatgaa
gcagatgagatgctcagaatgggctttattgatgatgttaaatttgtcttaagtcatgtt
tctgatgagtgtcaaaggttacttttttcagcaacaattcctactgatattgctgatatt
atcgaagagtatctaagaaatccttgtaagatacaagtaaaggctaagacaaaaactgcc
aacacagttacacaaaaatttatcgtaatcaaaggctttagaaagatagatgctttagat
agattacttgagaccgaagaaactgatggtgttattatctttgttaagactaagacaagt
actatagaagtaacagataatttaaaagctcttggttataaagtagcagctataaatggt
gatatgcaacaatcacagcgtgaatatattgttgatcaattcagaagtgctaaatcagat
atcctcgttgctacagatgtagtagctaggggtatagatcttgaacgtattagtcatgtg
attaactatgatatgcctaatgatactgatacatatgtacatagaattgggcgtacaggt
agagcagggcgtgaaggcacgtcaatttctttagtacctcttaaagagatgagattttta
cgtactttagagagatttacaggttcaccaatgcaagaagtatttatgccaagtgctaaa
gatttagctcaaagcagggtagaacactttaaagctagaataatctcagcattggataaa
aataagtctttagataagtataaagaaattattacaagtattcgtgatgaattacaatta
gactcagaagagcttttagctgggcttacattactagctcaaggtaagaaaactttcttc
ccaagagaaattcaagctaaagaagaaaaaccagctcgtgataatagaaattctagagat
ggtagaagaaatgaaagatttgagcgtagaaatgatcaaggtgatagaactaaacgtttt
gataaagcagatagaaagccacgtcgtgctgtaaacatcgatctaactacttataagtta
gatgttggtcgtgataatgatgttcaagcgcgaaatattgttggtgctatagctaatgaa
ggtaatatcgatagcaaacatatctgtaatatctctattcaaaaagattatacattagtt
gatttaccagcaaatctttcaccaaaagtgataaatcatctaaaaaaagtctgggttgct
gggaagaagttaaatcttactgttcagtaa
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