Francisella tularensis subsp. novicida U112: AW25_431
Help
Entry
AW25_431 CDS
T03874
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ftx
Francisella tularensis subsp. novicida U112
Pathway
ftx03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ftx00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AW25_431 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ftx03021
]
AW25_431 (rpoC)
03400 DNA repair and recombination proteins [BR:
ftx03400
]
AW25_431 (rpoC)
Enzymes [BR:
ftx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AW25_431 (rpoC)
Transcription machinery [BR:
ftx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AW25_431 (rpoC)
DNA repair and recombination proteins [BR:
ftx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AW25_431 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AJI61599
UniProt:
A0Q866
LinkDB
All DBs
Position
462380..466633
Genome browser
AA seq
1417 aa
AA seq
DB search
MNNGILHQNYNSKKFDIIKISLASPEVIRSWSHGEVKKPETINYRTFKPERDGLFCAKIF
GPIKDYECLCGKYKRLKHRGVVCERCGVEVEQAKVRRERMGHIDLVCPVVHIWYLKSLPS
RIGLFLDMPLKNVEKVLYFESYIVTDPGMTPLEKKQLLTDEEYAEALENYGYEFEASMGA
EAIRDLLADTDIESEIELLQAEYEESKSTAKKEKAIKRLRLLETFQASGNKPEWMVMTVL
PVLPPDLRPLVPIEGGRFATSDLNDLYRRVINRNNRLKKLLDLNAPDIIVRNEKRMLQEA
VDALLDNGRRGRAVTGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPSLR
LHECGLPKKMALELFKPFVYSKLRLGGHATTIKQAKRMVELEEAVVWDILETVINEHPVL
LNRAPTLHRLGIQAFEPRLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTVESQLEARV
LMMSTNNILSPASGQPIITPTQDIVLGLYYITREKEGARGEGKLFSSYEDVSRAYNSGTI
DIHAKIKLRIDRQVFDTKGNTYNEKGVVNTTVGRALLLNILPEGLSFSLLNKVLVKKEIS
KIINQAFRVLGGKATVVLADKLMYAGFKYSTLSGVSVGVDDMTIPDNKEAKIEEAEKEIK
QITEQYQSSLITENERYNNIINIWSKTSDEVGASMMDAISKDTVSINGEKKEIESFNSVY
MMAKSGARGSYNQMRQLAGMRGLMAKPDGTMIETAITANFREGLSVLQYFTSTHGARKGL
ADTALKTANAGYLTRRLVDVAQDLVVIEEDCGTDDGLMFSAIVEDGEVKVPLVERALGRT
LAADVVTEKGVVLLEAGTLLDENLVELLDDNGIDMIKVRSPITCKTRRGLCAKCYGRDLA
RERQVNVGESVGVIAAQSIGEPGTQLTMRTFHTGGAASLGITVSDIKVKTAGKIKFKNIR
TVTNKEGQEIVISRAGEIIVSDTMGRVREQHKIPMGAVVPLASGKAVEIGDVIATWDPHA
QPLITDVAGKVVLEDVIDGITSKHTYDDLTGQQTIEITSISQRTTSKNLKPVVKIVDEKG
AELKSIPLAVGAVLNVADDSILEVGDIVAKIPLEGSKNKDITGGLPRVAELFEARRPKDA
AILSPCDGMVRLGNRDTKEKQRIEIIDKNGHIVEEILLPKSRHLVVFDGEQVSRGDVLAD
GPTDPHDLLKYKGLEEFADYILIEAQSVYRMQGVVINDKHIETIVRQMLRKAVILDEGDS
KFVKDESIELVRILEENDKLRKQGKKEVEYELVLMGITRSSLSTESFLSAASFQETTRVL
TEASINSQIDNLRGLKENVLIGRLIPTGTGLAVRKESAKIEKMREELGVEDNMVFTDLSS
FNPEEISFDSIQSQKEDKDINEDIEESLRNALESLDF
NT seq
4254 nt
NT seq
+upstream
nt +downstream
nt
gtgaataacggtatcctacatcaaaattacaatagtaaaaagtttgatattattaaaata
tctttagcatcacctgaggttattcgttcgtggtctcatggtgaagttaaaaaaccagaa
actataaactatagaacatttaagcctgaaagagacggattattctgtgctaagatattt
ggtccaataaaagactatgaatgcttatgtggtaagtacaaaagacttaagcaccgtggc
gtagtctgtgagcgttgtggtgttgaggttgagcaagctaaagtaagaagagaaagaatg
ggacacattgatttagtatgtcctgtagtacatatttggtatctaaagtctttaccttct
agaattggtttatttttggatatgccattaaagaatgttgagaaggttttatactttgag
tcatacatagttactgacccaggtatgactccattagagaaaaaacaacttcttacagat
gaagagtatgctgaagcattagaaaattatggttatgagtttgaagcatctatgggtgct
gaagcaataagagatttattggcagacactgatattgagtcagagattgagttacttcaa
gctgaatatgaagagagtaaatctacagcgaagaaagaaaaagctattaagagattaaga
cttcttgaaactttccaagcttctggtaataaacctgaatggatggtaatgacagtacta
cctgtattaccaccggatttaagaccattggtaccaatcgaaggtggtagatttgcaact
tctgatcttaatgacttatatcgccgagtaatcaacagaaacaatagacttaagaagcta
ttggacctaaatgctcctgatattattgtcagaaatgaaaagagaatgttacaagaagcg
gtagatgctttattagataatggtagacgtggtagagcagtaacgggctctaataaaaga
ccacttaaatcattagcagatatgattaagggtaaacaaggtcgtttccgtcaaaactta
ttaggtaagcgtgttgactattctggtcgttctgtaattacagttggtccatctttgaga
ttacatgagtgtggtttacctaagaagatggcactagagttatttaaaccatttgtatac
tctaagctaaggttaggtggtcatgcaactactatcaaacaggctaagagaatggttgag
cttgaggaagctgtagtatgggatattcttgaaactgtgattaatgagcatccggtatta
ctaaaccgtgctcctacattacatagactaggtattcaagcgtttgagcctagacttatt
gaaggtaaggctatacagctacatccattagtttgtgctgcgtttaacgctgactttgat
ggtgaccaaatggctgtacacgtaccattaacagttgagtcgcaactagaagctagagta
ttgatgatgtcaacaaacaacatcttatcaccagcatctggtcaaccgattattactcct
actcaagatattgtattaggtctatactatatcactagagagaaagaaggtgcgcgtggc
gagggtaaattattctctagctatgaggatgttagtagagcttataactcagggactata
gatatccatgctaagattaaactaagaatagatagacaagtatttgatactaaaggtaat
acatacaatgagaaaggtgttgttaatactaccgttggtagagcacttttattgaatata
ctaccagaaggtctatctttctctctattaaataaagtactagttaagaaagaaatttct
aaaattattaatcaggcatttagagtcttaggtggtaaagctacggtagttttagcagat
aagttgatgtatgcaggatttaaatattcaacattgtcaggggtatctgttggtgttgat
gatatgactattcctgataacaaagaagctaaaattgaagaagcagaaaaagaaattaag
caaattaccgaacagtatcagtcttcattaattactgaaaatgagagatataacaatatt
atcaatatttggagtaagacttcagatgaggttggagcttcgatgatggatgctatatct
aaagatacagttagtattaacggtgagaaaaaagaaatcgagtcattcaactctgtatat
atgatggctaaatcaggtgcaaggggttcttataatcagatgagacagcttgcaggtatg
cgtggtctgatggctaagccagatggtacgatgattgaaactgcaattacagcaaacttt
agagaaggtctgtcagtattgcagtactttacatctacgcacggtgcacgtaaaggtcta
gctgatacggctcttaagacagctaacgcgggttatctgacgcgtagactagttgatgtg
gctcaagatttagttgttattgaagaagattgtggtactgatgatggtttgatgttctca
gctatcgttgaagatggtgaagtcaaagttcctctagtagagcgtgctttaggaagaact
ttagcagcagatgtggttactgagaagggggttgtattgcttgaagcaggtactttatta
gatgagaatcttgttgagttacttgatgataacggtattgatatgatcaaagtcagatca
ccaataacttgtaaaacacgtagaggattatgtgctaagtgttatggtcgtgatctagcg
cgtgaaagacaagttaatgttggggaatctgtaggtgtgatcgctgctcaatcaattggt
gagccaggtacgcagttgacaatgagaacattccacaccggtggtgctgcgtctctgggt
attacagtttctgatattaaagttaaaaccgctggtaagattaagtttaagaatattaga
actgtaactaacaaagaaggtcaagaaattgttatatctcgcgcaggtgagattatcgtt
tctgatactatgggtagagtgagagaacaacacaagatccctatgggtgcagtcgttcct
ttagctagtggtaaagcagtagaaattggtgatgtgattgctacgtgggatccgcatgct
cagccattaattacagatgttgctggtaaagttgttcttgaagatgtgattgatggtata
acatctaagcatacttatgatgatttgactggtcagcaaactattgagataacttcaata
tctcaaagaacaacatctaaaaacttaaaaccagttgttaagattgttgatgaaaagggt
gctgagcttaagtcaatacctctagcagttggagcagtactaaacgttgccgatgattct
atactagaagttggtgatatcgtagctaagattcctctagaaggttctaagaacaaagat
attaccggaggtcttccacgtgttgctgagcttttcgaagctagacgtcctaaagatgcg
gcaatactttctccatgtgatggtatggttaggcttggtaacagagacactaaagagaaa
cagcgtattgagattatagataaaaatggtcatattgttgaagagatattattacctaag
tctcgtcacctagtagtttttgatggtgagcaggtttctaggggtgatgttttagctgat
ggacctactgatccacatgatcttcttaagtacaaaggacttgaggaatttgctgattat
attcttatcgaagcgcagtctgtatatcgtatgcagggtgttgttattaatgataagcat
attgaaacaattgtaagacaaatgttaagaaaagctgtaatccttgatgaaggtgatagt
aagtttgtcaaagatgaaagtattgagttagtaagaatacttgaagaaaatgataaacta
cgtaagcaaggtaaaaaagaagtagagtatgagctggtattaatgggtattacacgttct
tctttatctacggagtcattcttatcggctgcttctttccaagaaacaacaagagtgctt
actgaggcttcgataaactcacaaattgataatttaagaggacttaaagaaaatgttctt
atcggtagattaataccaacaggtactggtctagcagtaagaaaagagtcagctaaaatt
gaaaaaatgcgtgaagaattaggggttgaagataatatggtgtttactgatttatcgtct
tttaaccctgaagaaatctcttttgatagtattcagtctcaaaaagaagataaagatatt
aatgaagacatcgaggagtcattaagaaacgctcttgagtcacttgatttctaa
DBGET
integrated database retrieval system
