Francisella tularensis subsp. novicida U112: AW25_569
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Entry
AW25_569 CDS
T03874
Symbol
hrpA
Name
(GenBank) RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ftx
Francisella tularensis subsp. novicida U112
Brite
KEGG Orthology (KO) [BR:
ftx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ftx03019
]
AW25_569 (hrpA)
Enzymes [BR:
ftx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AW25_569 (hrpA)
Messenger RNA biogenesis [BR:
ftx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AW25_569 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
nSTAND_NTPase5
WHD_HA2
RsgA_GTPase
nSTAND3
AAA_19
T2SSE
NTPase_1
NACHT
ABC_tran
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AJI60374
UniProt:
A0Q7T5
LinkDB
All DBs
Position
612971..616990
Genome browser
AA seq
1339 aa
AA seq
DB search
MSIHIDAFLNQIPTKFRGKFISVIKNKNLPNQQLLEQLQVLAEQTKQKILPKITYPDLPV
AERVDDIKKLLQDNQVIVVAGETGSGKSTQLPKICLDLGLGKRGLIGHTQPRRLAARSIA
SRIASEIGDQSKVSFKIRFSDQTSENTLIKVMTDGVLLSEIKNDRFLSQYEVIIIDEAHE
RSLNIDFLLGCIKKILPFRPDLKVIITSATIDHQKFINFFQNAKDIIISGRTYPVEIRYQ
NDEDFDEFSLQERILYALDELGRGDVLVFLPTERDIHETLAYLNKQNLRFTEVLPLFSRL
SNKDQNKIFNPEGSVRRVILATNVAETSLTVPRIKYVIDSGLARISRYSYRTKVQRLPIE
KISQASANQRAGRCGRLSAGICIRLYSEEDFNNRKEYTEPEILRTNLASVILQMLFLKLG
SIQDFPFIDAPDARFVKDGFKLLFELQAISELNYSKPKITDDGMKMAVMPLDPKLAKIVI
EGYRQNTLREIVSIVSFLSVQDPRERPLNLQQKADEKHSIDKDKSSDFVAILNLANRLNS
DLKGLSNREKKEYFKKNFISPVRFNEWNDIYRQIIEVIHGFGWKLNSQLVIKKDSSDSGL
DLESFEHRGQSHDNEILKQVHNDRQILTNSSNIKINLHSHESANLIANDQNLKNTRLHAY
DSASAMINYENLHKAIASGFLSNIGYNYENAEYLGARGLKFFIFPGSSQFKAKPKWLLSS
EIVETTKTYARNVAKIEPEWLESLASHLVKKHYDEPVWSKKRRAVIVNERVTLYGLEIVS
KRVVQYSKINPREAREIFIREALVNGDFDSKAYFYQQNLKLINQVEDLENKSRRKDILVD
EQTMFEHYDAFIPNEVCDGATFDKWLKSITKEQQKGFIFDMEILMQHDAKEITQQKFPDV
LTIGDMHLPLEYNFDPLDERDGATVTIPIVFINNISSAVLEWGVYGFLYDKIVALLRALP
KNIRKNCVPVPTYAQAIFESLDFDKDRYTPLKSVIAKHITRIVGFVVDETVWQNEELDKY
LVLNIKVVDEHGKTLALGKDINTLKEKLKNLVNKPKQEVDEKIYYDWDFADIALTNQIKE
YGIVLKVYNCLEEYKGGVKLSYKSTLAEAQSCMKRALKRLIKIRLQNQLSQKIKNNDLTS
LSMSLKLSDSKDSVIDKVIDLSFFDNIELPYTKGDFERFYALGMQKFVSNKSKVEALLLE
MTKFKTQLEKKLNAKKIPLNFIELFTAVRNELNELFTDNYLSQPMIYLQRYKYYIQALEN
RLDKAKLNLQRDRIYQLEVDELKAKLAKKLVAKHLSTGDEEVTKIRFLIKELWISWYLQN
VKTSESVSVKKILVYINQI
NT seq
4020 nt
NT seq
+upstream
nt +downstream
nt
atgtctatccatattgatgcttttcttaatcaaatacccaccaagtttcgtggtaaattt
atatctgtaataaaaaataaaaatcttccaaaccagcagctacttgagcagctacaagta
ttagctgagcaaactaaacaaaagatcttacctaaaataacctatccagatctacctgtt
gctgaaagagtcgatgatataaaaaagcttctccaagataatcaagttatagttgtggca
ggagagacaggctctggtaaatcaacccagcttcctaaaatctgtctagatttaggactt
ggtaagcgtggattaattggacacactcaacctagaagacttgcggctagatctattgct
agtagaattgctagtgaaataggtgatcagtcaaaagtatcttttaaaattcgtttttct
gatcaaacttctgaaaatactttaataaaagtaatgaccgatggggtattactgtctgaa
atcaagaatgatagatttttgtcgcagtatgaggttattatcattgatgaggctcatgaa
agaagcttaaatattgattttctacttggctgtataaaaaagattttaccatttagacct
gatttaaaagtaattattacttcagcaacgatagatcatcaaaaatttataaattttttt
caaaatgctaaagatattataattagtggtagaacatatcctgttgaaattcgctatcaa
aatgatgaagattttgatgagttctcattacaagaaagaatattatatgctcttgatgag
cttggtcgaggagatgttttagtttttttaccaaccgaaagagatattcatgaaacatta
gcatatttgaacaagcaaaatcttagatttacagaagttttacctttattttcaaggtta
tcaaataaagatcaaaataaaatttttaatcctgaaggttctgtgcgtagagttatttta
gcgacaaatgttgcggaaacatctttgacagtaccacgtataaagtatgttatagactca
ggtttagcacgaataagtagatatagttatcgtactaaggtgcaacgcctaccaatagaa
aaaatctctcaagcaagcgccaatcaaagagcgggtcgctgtggtaggttatctgctggt
atctgtatacgcctttatagtgaggaagactttaataatcgtaaagagtacacggagcct
gagattttacgtactaatttggcatcggttattttacagatgttatttctgaaattagga
agtattcaagattttccatttattgatgctcctgatgcaaggtttgtaaaagatggtttt
aaacttttatttgagttacaagctatttcagaacttaattattcaaagcctaaaattact
gatgatgggatgaaaatggcagttatgccattagatcctaagttggcaaaaatagttatt
gagggttacagacaaaacactcttagagaaatagtttcgattgttagtttcttgagtgta
caagatcctagagaaagacctttgaacctccagcaaaaggcagatgaaaaacactcaata
gataaagataaatcttctgattttgttgcaatattgaatttggcaaatagactaaattct
gatttaaagggtttatcaaatagagaaaaaaaagaatatttcaaaaagaactttatttcg
ccagttagatttaacgaatggaatgatatttatcgacaaattattgaggtcattcatgga
tttggttggaagctaaatagtcaacttgtaataaaaaaagatagtagtgattctggactt
gatctagaatcttttgagcataggggtcaaagccatgataatgagatcttgaaacaagtt
cataatgataggcagattttaacaaatagttcaaatattaaaattaatcttcattcccac
gaaagtgcaaatctcatagctaatgatcaaaatttaaaaaatacccgtctacacgcgtat
gacagtgctagcgccatgataaactatgaaaacttacataaagccatagccagtgggttt
cttagtaatattggttataactatgaaaatgcagagtatctaggagctagaggacttaag
ttttttatatttccaggatcttcccagtttaaggcaaagccaaagtggttactttcatcc
gaaatagttgaaactactaaaacatatgctcgaaatgttgcaaagattgagcctgagtgg
ttagagagtttggcaagccaccttgtcaaaaaacactatgatgagcctgtgtggagtaaa
aaacgtagagctgtaatagtaaatgaaagggtaacattgtacggcttagagatagtttca
aaaagagtagtgcaatactcaaagataaatcctcgagaggctcgagagatttttattcga
gaagctttagtaaatggtgattttgactctaaagcatatttttatcaacaaaatctcaag
cttataaatcaagttgaagatcttgaaaataaatcacgtcgaaaagatatcttggtagat
gagcagactatgtttgagcattatgatgcttttattccgaatgaagtttgtgatggtgca
acatttgacaaatggttaaagtcgatcacaaaagagcagcaaaagggctttatctttgat
atggaaattctaatgcagcatgatgctaaagagattacgcaacaaaagtttccagatgtt
ttaactattggcgatatgcacttaccattagaatacaactttgatccactagatgagcga
gatggtgcaactgttacaataccgatagtttttatcaataacattagttcagcagtgtta
gagtggggggtgtatggtttcttgtatgataagatcgttgctttattgcgagcattgccc
aaaaatatccgtaagaactgtgtgccagtgccaacttatgctcaagctatatttgagtcg
ctagattttgataaagatagatatactcctttaaaatctgtcattgctaaacatattacg
cgtattgttggattcgtagttgatgagacagtatggcagaatgaagaattagataaatat
ttagttttaaatataaaagttgttgatgagcatggtaaaacacttgcgcttggtaaagat
atcaatactttaaaagaaaagctcaaaaacctagttaataaacctaagcaagaagtcgat
gagaaaatttattatgattgggattttgctgatattgctctaaccaatcaaattaaagag
tacggtatagtactcaaagtatacaattgtcttgaggaatataaaggtggtgtgaaactg
tcatataaatcaactttagcagaagcacagtcttgtatgaaaagggctttgaagagactt
attaagatacgtctacaaaatcaattatcgcaaaaaatcaaaaacaatgatttaacaagt
ttatcaatgtcattaaaactaagtgactcaaaagatagtgtcatagataaagttattgat
ttgagtttttttgataatattgagctaccatatactaaaggagattttgaaagattctat
gctttaggaatgcaaaagtttgtttcaaataaatctaaagtcgaagcattacttttagaa
atgactaagtttaaaacacagcttgaaaaaaaacttaatgctaaaaaaataccacttaat
tttatcgaactttttacagctgttagaaatgagctaaatgagctttttactgacaattat
ttatcacaacctatgatttacttgcagcgatataagtattatattcaagctttagaaaat
cgattagataaggcaaaactaaatctgcaaagagataggatatatcaattagaggttgat
gagcttaaagctaagctagctaaaaagcttgttgctaaacaccttagcactggtgatgaa
gaagtaaccaaaattcgttttctgataaaagagttatggatatcttggtatttacaaaat
gtaaaaactagtgaatcagtttcggttaagaagattctagtttatattaatcagatatag
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