Francisella tularensis subsp. novicida U112: AW25_647
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Entry
AW25_647 CDS
T03874
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V, alpha subunit
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
ftx
Francisella tularensis subsp. novicida U112
Pathway
ftx03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ftx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
AW25_647 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ftx03400
]
AW25_647 (recD)
Enzymes [BR:
ftx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
AW25_647 (recD)
DNA repair and recombination proteins [BR:
ftx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AW25_647 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
Viral_helicase1
AAA_11
UvrD_C_2
UvrD-helicase
Helicase_RecD
SLFN-g3_helicase
SH3_13
UvrD_C
AAA_22
ResIII
DEAD
PhoH
nSTAND3
Flavi_DEAD
RecD_N
ATP-synt_ab
AAA_12
TrwB_AAD_bind
NACHT
SRP54
PIF1
TIP49
AAA_7
AAA_24
AAA
AAA_28
AAA_33
Terminase_6N
T2SSE
FtsK_SpoIIIE
AAA_16
CbiA
Motif
Other DBs
NCBI-ProteinID:
AJI61225
LinkDB
All DBs
Position
694851..696623
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AA seq
590 aa
AA seq
DB search
MYKTFHKACEQLADIRAIDFFFAKEVFDLVKKTTPSMTTLSSESYPPLHGAKGNDLEQKS
NEILFHILMKLMHVYSHGHSCLKIADISNKTIFASEQSNQSDAKVGFKMPSSDKIANILD
SLNYDNLPIYFAKQYDSLYIKRLWNYENEIANFIKLKTIQNTQKDNRIEEVVDKLFEPAG
EINWQKQAVIKSLNYNFSIISGGPGTGKTTTVAKLLLAIQMLNQNQQRIALLAPTGKAAQ
RMTESLNSVLSKRVDNDSYLGLSNLEAQTIHRFLGLRPNSTHVKYSKQSKAPYDVIIVDE
ASMLDMNIFIKLIRAVADNTKLILIGDTNQLPSVEAGSLLANFTHDKYGSITPYTTLLIK
NYRSQQYINNLAASVLKGDVNIDSHQNENINFHSLRNLDTYLREYAKRYSQLEKCRNYKE
ALTELNKFRILVANKNLEIGTDKLNQKIEKFMSKPIDSNYKGKPIMITQNSYSLGLFNGD
VGIIWPDDTGKLRAYFDGKDAKAFSLNMLPKYESVYAMTIHKTQGSEFDEIVIILPAEDN
EALSKQLLYTAITRAKYKLTIISEQSSLRDIAQKDIKRNSNISELVSLSD
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgtataaaactttccataaagcttgtgagcaattagcagatattagagccatagatttt
ttctttgctaaagaggtgtttgatttagtcaaaaagactactccgtctatgaccacttta
tcaagtgagtcatatccaccccttcacggagcaaaggggaatgatttggaacaaaaaagt
aatgaaattttatttcatattctgatgaaacttatgcatgtatatagccatggtcatagc
tgtttgaagatagcagatatatcaaataaaactatttttgcttcagagcaaagtaatcag
agtgatgctaaagtagggtttaaaatgccaagctctgataaaattgcaaatattttagat
agcttaaattacgataatttacctatatattttgccaaacagtatgattctttgtatatt
aaaagattgtggaattatgagaatgaaatagctaactttataaaattaaaaacaatccaa
aatactcaaaaagacaatcgtattgaagaagttgtagacaaactatttgaacctgctggt
gaaatcaactggcagaaacaggcagttatcaaaagtctaaattataattttagtattatc
tcaggtggaccaggtacaggtaagacaactacagtcgcaaagcttttacttgctatacaa
atgcttaatcaaaatcagcaaagaatagcgcttttagcaccaactggtaaggctgctcag
agaatgacagaatccttaaatagtgtattaagtaaaagggtagacaatgatagttatttg
gggttatctaatttagaagctcaaactatacataggtttttaggcttaagaccaaactct
actcatgtgaaatatagcaagcagtcaaaagcaccatacgatgtgattattgttgatgaa
gcttcgatgcttgatatgaatatttttattaagttgattagagcagtagctgataatacc
aagctaattttgataggtgatactaatcagttaccatctgttgaggctgggagtctttta
gcaaactttacacatgataaatatggtagcattacgccatatacaacattacttatcaaa
aactatcggtcacaacaatatataaataatcttgcagcctcagtcctaaaaggcgatgtt
aatattgatagtcatcaaaatgagaatattaattttcatagtttaagaaatttagatact
tatttaagagagtatgcaaagagatactcacagcttgaaaagtgccgtaactacaaagag
gctcttaccgagctaaataaatttagaatacttgtggctaacaaaaacctagaaattggt
acagataagttaaatcagaaaattgagaagtttatgtctaagcctatagattctaactat
aagggtaaaccaattatgataactcaaaatagttattcattagggttatttaatggagat
gtagggattatctggcctgatgatactggtaagctccgagcatattttgatggtaaagat
gctaaggcatttagtctaaatatgctaccaaaatatgaaagtgtttatgcgatgacaatt
cataaaactcaaggctcagagtttgatgaaatcgtgattattcttccagcagaagataat
gaagcgctaagtaaacaacttttgtatacagctatcactagagcaaaatataaattaacg
attatatctgaacaaagtagcttaagagatattgctcagaaagatattaagagaaattca
aatatcagtgaattagttagcttgagtgattaa
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