Francisella tularensis subsp. novicida DPG 3A-IS: CH70_1190
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Entry
CH70_1190 CDS
T03875
Name
(GenBank) DEAD/DEAH box helicase family protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fty
Francisella tularensis subsp. novicida DPG 3A-IS
Pathway
fty03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fty00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CH70_1190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fty03019
]
CH70_1190
Enzymes [BR:
fty01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CH70_1190
Messenger RNA biogenesis [BR:
fty03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CH70_1190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
P-loop_SecA
HI1480
MerR-DNA-bind
Flavi_DEAD
MoaF_like
Motif
Other DBs
NCBI-ProteinID:
AJJ47535
LinkDB
All DBs
Position
complement(1198436..1199764)
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AA seq
442 aa
AA seq
DB search
MKFSDLGLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPII
QRLLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKL
RKGVEILIATPGRLLDLYSQSAVKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQ
TLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKINALISLIKD
QNLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLVAT
DIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSNIEH
LIGHLLPREELEGFEATHNVPITSMSHKTKAKKIDEVKIIAAKRAKKNNNNKKPSNHNND
FAKKIRQKIHQNKSVRKPKAKD
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgaaattctcagatttaggtttaaattccttaatatgtagcgctttagaaaagaagggt
tatacaaaaccaactcctattcaagcacaagcgataccaatagttctaaagggtaatgat
gttatggcatcagctcaaacaggaacaggaaaaacagcaggctttacattaccaattatc
caaagactccttgatcaacccaaagctcaagcaaataggatcaaaacattaatcctaact
ccaacaagagagctagcagcacaaattcaagaacaaattcaaatatatgccgcaaataca
catattcgttcagcagtaatatttggtggagtgagtattaatcctcaaatgatgaaatta
cgtaaaggtgtcgagattttgatagctactcctggaagattacttgacttatatagtcaa
agtgctgtcaagtttgatagtttaaatacttttgttttagatgaagcagacagaatgtta
gatatgggtttcattaatgatttaaaaaaaatccataaacttttaccgaaaaagttacaa
acactaatgttctcagcaacattttcatcagagataaaaaatcttgctaatgaatttcta
aataatccccagtttgtatcagctgatgttgtaaatacgacggtcaaaaagattactcag
aaaatttatacattagataaatcaaataaaattaatgcgctaatctcactaataaaagat
cagaatctacatcaagtactagttttctcacggactaaaaatggagcaaataaaatttcg
gaaaagttaaataatgctggcattagtagtagtgctattcatggtaataaaagtcaaacc
gctcgtactaaagctttagctgattttaaatctaatgatataaatgtcttagttgctact
gatattgcagctcgtggaattgatattgcccaacttccttgtgtgataaatcttgattta
ccaaatgtcgctgaagactatgtccatagaataggtagaactggcagagcaggacaagag
ggtttagcaatttctcttgtaagtgctgatgaagtcgaatctttatcaaacattgaacat
ctgatcgggcatcttttaccacgagaggaactagaaggctttgaggcaactcataatgta
cctataacaagtatgtcacacaaaaccaaagctaagaaaatcgatgaagttaagataata
gctgcaaaaagagcaaaaaagaacaataacaacaaaaaaccttctaatcataataatgat
tttgctaaaaaaattagacaaaaaatacatcaaaataaaagtgttagaaaaccaaaggca
aaagattaa
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