Francisella tularensis subsp. novicida DPG 3A-IS: CH70_1357
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Entry
CH70_1357 CDS
T03875
Name
(GenBank) hypothetical protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fty
Francisella tularensis subsp. novicida DPG 3A-IS
Pathway
fty03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fty00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CH70_1357
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fty03019
]
CH70_1357
03009 Ribosome biogenesis [BR:
fty03009
]
CH70_1357
Enzymes [BR:
fty01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CH70_1357
Messenger RNA biogenesis [BR:
fty03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CH70_1357
Ribosome biogenesis [BR:
fty03009
]
Prokaryotic type
rRNA helicases
CH70_1357
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Utp25_C
AAA_30
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AJJ48048
LinkDB
All DBs
Position
complement(1367949..1369658)
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AA seq
569 aa
AA seq
DB search
MNSETKKDFSQLGLNQDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAA
FALPLINNMDLASRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGS
QIRALKQGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHV
SEQCQRLLFSATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALD
RLLETEETDGVIIFVKTKTSTIEVTDNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSD
ILVATDVVARGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFL
RTLERFTGSPMQEVFMPSAKDLAQSRVEHFKARIISALDKNKSLDKYKEIITSIRDELQL
DSEELLAGLTLLAQGKKTFFPREIQAKEEKPARDNRNSRDGRRNERFERRNDQGDRTKRF
DKADRKPRRAVNIDLTTYKLDVGRDNDVQARNIVGAIANEGNIDSKHICNISIQKDYTLV
DLPANLSPKVINHLKKVWVAGKKLNLTVQ
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgaattctgaaactaaaaaagattttagtcagcttgggctgaatcaagatattgtagat
actgttattaaactaggatatgaaaatccaacacctatccaacagtatgctattccatat
atcttatcgggtagagatgtgctaggtcaagcacaaacgggtacgggtaaaacagcagct
tttgcattacctctaataaacaacatggacttggcatctagagatagagctccacaagtt
ttagtactagcacctacaagagagttagctatacaagtggcggagcagtttgaagctttt
gctaaaaatgtacctaatttagatgttgcttgtatttatggtggtcaagaatatggttct
caaataagagcacttaagcaaggtgtaaaagttgtagttggtacaactggtcgagtaatg
gatcatattgagaaaggtacattacagcttgataatcttagagcattagtattagatgaa
gcagatgagatgctcagaatgggctttattgatgatgttaaatttgtcttaagtcatgtt
tctgaacaatgccaaagattacttttctcagcaacaattcctactgatattgctgatatt
atcgaagaatatctaagaaatccttgtaagatacaagtgaaagcgaaaacaaaaactgct
aatacagtgacacaaaaatttatcgtcattaaaggctttagaaagatagatgctttagat
agattacttgagaccgaagaaactgatggtgttattatctttgttaagactaagacaagt
actatagaagtaacagataatttaaaagctcttggttataaagtagcagctataaatggt
gatatgcaacaatcacagcgtgaatatattgttgatcaattcagaagtgctaaatcagat
atcctcgttgctacagatgtagtagctaggggtatagatcttgaacgtattagtcatgtg
attaactatgatatgcctaatgatactgatacatatgtacatagaattgggcgtacaggt
agagcagggcgtgaaggcacgtcaatttctttagtacctcttaaagagatgagattttta
cgtactttagagagatttacaggttcaccaatgcaagaagtatttatgccaagtgctaaa
gatttagctcaaagcagggtagaacactttaaagctagaataatctcagcattggataaa
aataagtctttagataagtataaagaaattattacaagtattcgtgatgaattacagtta
gactcagaagagcttttagctggacttacattactagctcaaggtaagaaaactttcttc
ccaagagaaattcaagctaaagaagaaaaaccagctcgtgataatagaaattctagagat
ggtagaagaaatgaaagatttgagcgtagaaatgatcaaggtgatagaactaagcgtttt
gataaagcagatagaaagccacgtcgtgctgtaaatatcgatctaactacttataagtta
gatgttggtcgtgataatgatgttcaagcgcgaaatattgttggtgctatagctaatgag
ggtaatatcgatagcaaacatatctgtaatatctctattcaaaaagattatacattagtt
gatttaccagcaaatctttcaccaaaagtgataaatcatctaaaaaaagtctgggttgct
gggaagaagttaaatcttactgttcagtaa
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