Francisella tularensis subsp. novicida DPG 3A-IS: CH70_905
Help
Entry
CH70_905 CDS
T03875
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fty
Francisella tularensis subsp. novicida DPG 3A-IS
Pathway
fty03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fty00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CH70_905 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fty03400
]
CH70_905 (mfd)
Enzymes [BR:
fty01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CH70_905 (mfd)
DNA repair and recombination proteins [BR:
fty03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CH70_905 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
MFD_D3
ResIII
ERCC3_RAD25_C
AAA_22
UB2H
RecG_dom3_C
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
AJJ47439
LinkDB
All DBs
Position
complement(927379..930804)
Genome browser
AA seq
1141 aa
AA seq
DB search
MLNNQISANDTVVSNAYGSAFSILFNEYLKQNNQFNLIVTEDSQQAHKIYKELKYLNKNN
SKVDILFFPNLEILPYDRFSASIDIISRRQEILYKMTHQPQNTLIITSISNTLRKIAPAS
FIQEHSFILKTGDNLNITKYKMLLTEAGYTLVNNVFEKGEFSIRGSIIDIYPIGSKVAFR
IDLFDNEIDSIKELNTESQRSGNQIQSINIMPSHELVYNNQNTTFALDKLNKLCGDKALN
STIATYIQNNEYFSGIEFYLPLFYDKLFSLYDYLPPSTNIHLVDNITNSIEAFSDEVKFR
YNELKHDSDRPILPFQEIFYSQQEIQDIYQQYKNIKWFQQPKSKSKILKVDHLEKISANY
KLANPFKDLQQFIDKSNFDKVIFSTDSNGRAELLLEHLNKLNLNIQSCKNFNEAIEVTAN
FCLIISPFQEGMIIDKKIALITEADLFPEHSYNSTKVSQHDHHPTVDLKDLTDLKPGMHV
VHIDHGIGRYEGLESIELNGKKDEFILLRYANDAKIYVPITSLNLISIYNSSLTEKIALN
KLGTDKWKKQKEKTIKKIIDVAANLLEIYAKREMRQGFSNSLDEEEYLRFCADFPYEETP
DQLSAINDVFKDMISAKPMDRLICGDVGFGKTEIAMRAAFLATQNQKQVAILVPTTILAQ
QHYNSFKDRFTNTAVNIEVITRSKTPKAQQQLFEDLKKGTVDIIIGTHKLISSKIDFKNL
GLLIIDEEHRFGVAQKEKLKSLKAEIDILTMSATPIPRSLSMAFSALRDLSIIASPPAKR
LSVKTFVKEYDNNIIREAVSRETIRGGQIFYLYNKVETIQKKKEILQELFPRLRIAIAHG
QMSEKEIQKVMFDFKHNKYHILLCTTIIETGIDIPNANTLIIEDANNLGLAQLHQLRGRV
GRSHHQAYAYMLIPNEASITKDALKRLEAISNAESLGGGFTLANHDLEIRGAGEILGEEQ
SGNIDGIGLNLYMDLLDKTIANLQAGKELNIEEVINSTVCEVELNIPTLIPDYYIYDVNT
RLNIYKRISKASHQDLVNIKIELIDRFGKLPLEVLYLLKVAHIKIDAIALGISQIKMFAT
SGKISFSNNTKFEPQKLIKLIQSQPSDFRLTKEHDLIITKVTKTAEQRIEFIENFLKKIV
Q
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgcttaataaccaaatatctgctaatgatacagttgtatctaatgcttatggatctgct
tttagtattttgtttaatgaatatctcaagcaaaataatcagtttaatttaatagttact
gaagactcacaacaagcacataagatatacaaagaattaaaatatctaaataaaaataat
tcaaaggtagatatcctattttttccaaatttagaaatccttccttatgataggttctca
gcttctatagatattatctctagacgccaagaaatcctatataagatgacacaccaaccc
caaaatactctaataatcacaagtatctcaaatacactaagaaaaatagcaccagcaagt
tttatacaagagcatagttttatacttaaaacaggtgataacttaaatataactaaatat
aaaatgcttcttacagaagcaggttatactttagtaaacaatgtttttgaaaaaggtgag
tttagtattcgtggtagtattattgatatatatcctatcggctcaaaagttgcttttagg
atagatctttttgataatgagattgatagtatcaaagagcttaatactgaaagtcaacgc
tctggtaatcaaatacaatcaatcaacataatgccatctcatgagctggtgtataacaat
caaaacactacttttgctttagataagctcaataaattatgtggtgataaagctcttaat
tcaactattgcgacatatatacaaaataatgaatattttagtggtattgagttttatttg
cctttgttttatgacaaactttttagtctttatgattatctaccaccatcgacaaatatt
cacttagttgataatattactaattcaattgaggctttctctgatgaggtaaaatttaga
tataatgaacttaaacatgatagtgatagaccaattctaccctttcaagaaatcttttac
tcacaacaagaaatacaagatatctaccaacaatataaaaatattaaatggtttcaacag
ccaaaatcaaaatccaaaatactcaaagtagaccatttagaaaaaatttcagcaaactac
aaacttgcaaatccattcaaagatttacaacagtttattgataaatctaattttgacaaa
gttattttctcaactgactcaaatggtcgtgctgaactacttctagagcacttaaataag
cttaacctaaatatacaaagctgtaaaaattttaatgaagctatagaagtaactgctaat
ttctgcttaataatttcgccttttcaagaaggtatgattatagacaaaaaaattgctcta
attacagaagcagatttatttcctgaacatagctataactccaccaaagtttcacagcat
gatcaccaccctactgttgatcttaaagatcttacagatctaaaaccaggaatgcatgtt
gttcatattgatcatggtatcggtagatatgaaggtttagaaagtattgagctaaatggt
aaaaaagatgagtttatattactaagatatgcaaatgatgccaaaatctatgtaccaatc
acttcactaaatctaatctctatttataactcttcacttactgaaaagatagcattaaat
aagcttggtacagataagtggaaaaaacaaaaagaaaaaactattaaaaagattattgat
gtagcagcaaatcttctcgaaatttatgcaaaaagagaaatgcgccaaggttttagcaat
agcttagatgaagaagaataccttagattttgcgcagactttccttatgaggaaactcct
gatcaactttcagctattaatgatgtatttaaagatatgatttcagctaaacctatggat
aggctaatctgtggtgatgtaggttttggtaaaacagagattgcgatgcgagcagcattc
cttgcaacacaaaatcaaaaacaagttgctattttagtacctacaacaatcttagctcaa
cagcattataatagctttaaagatagatttactaacactgctgttaatatcgaagtaatt
acccgttcaaaaactccaaaggcgcagcaacaactttttgaagaccttaaaaaaggaacc
gtagacataattatcggcactcataaactaatttcatcaaaaattgactttaaaaattta
ggtttattaattattgatgaagaacatcgttttggtgtcgctcaaaaggaaaaactaaaa
tcattaaaagccgagatagatattttaactatgtctgcaacacctattccgcgtagttta
agtatggcgttttcagcactaagagacttatcaattatcgcttcaccacctgccaaacgc
ttatcagttaaaacttttgtcaaagaatatgataataatataatccgtgaagctgtaagt
cgtgaaactattcgtggtggacagattttttatctttataataaagttgaaactattcaa
aagaaaaaagaaattcttcaagagttgtttccacgcttacgtatagctatagctcatgga
caaatgagcgaaaaagaaatccaaaaagttatgtttgattttaaacataacaagtaccat
atattactatgtaccacaattattgagacaggtattgatataccaaatgctaatactcta
attattgaagatgctaacaatctaggtttagctcaacttcaccaactaagaggtagagtt
ggtcgatcacatcatcaagcttatgcatatatgctaataccaaatgaagcaagcattacc
aaagatgcactaaaaaggcttgaggctattagtaatgccgaatcactaggtggtggtttt
actttagctaatcatgatttagagattcgtggcgctggtgaaatacttggagaagagcaa
agtggtaatattgatggtattggtctaaatctatatatggatctactcgataaaacaatt
gcaaatctacaagctggtaaagagctcaatatcgaagaggttattaattctacagtctgc
gaagttgagttaaatattccaacactaattcccgattattatatttatgatgtcaacact
cgactaaacatctataaacgaatttcaaaagctagtcatcaagatttagtaaatatcaaa
attgaacttatagatcgctttggcaaattacctttagaagttctttatttacttaaagta
gcacatataaaaatagatgcgattgcattaggaatttcccaaataaaaatgtttgctaca
tctggcaaaattagtttctcaaacaatacaaaatttgaaccacagaagctgataaaactt
attcaatcacaacctagtgattttagactgactaaagagcatgatttaattataacaaaa
gttacaaaaactgctgaacaaagaatagagtttatcgaaaactttttgaagaaaatagtt
caataa
DBGET
integrated database retrieval system
