Fulvivirga ulvae: LVD17_08280
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Entry
LVD17_08280 CDS
T09269
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
fua
Fulvivirga ulvae
Pathway
fua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LVD17_08280 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fua03019
]
LVD17_08280 (rnr)
03016 Transfer RNA biogenesis [BR:
fua03016
]
LVD17_08280 (rnr)
Enzymes [BR:
fua01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LVD17_08280 (rnr)
Messenger RNA biogenesis [BR:
fua03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LVD17_08280 (rnr)
Transfer RNA biogenesis [BR:
fua03016
]
Prokaryotic type
tRNA degradation factors
LVD17_08280 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
OB_HELZ2
OB_RNR_1st
RNase_II_C_S1
RcpB
UBD
Motif
Other DBs
NCBI-ProteinID:
UII33813
LinkDB
All DBs
Position
complement(2019999..2022161)
Genome browser
AA seq
720 aa
AA seq
DB search
MSQKKRKKKNHGKSGGIKEKLNARILSLLNSNYNKVYTASQVAKKLGYRRKDYNREIPYV
LSDLHRSGKIIQLTNGSYKSVSEAEFLIGKLDHVNPRFAYLLTPDDKEDVYIKAQDINFA
MDGDTVKVQLKGAGDGRKPEGRVVEIVERAREQFVGRIEFSPRFAFVIADNKKIHQDIFV
KLDATHGARHNDKVIVKVTQWPAHDKSPEGEIVNVLGPAGDNEAEIHSIMAEFDLPFEFP
EHIEQEAEKISDKITKNEIEKRRDFRDVLTFTIDPEDAKDFDDALSFQVLENGNYEIGIH
IADVTHYVLPNTTLEKEAFDRATSVYLVDRTVPMLPERLSNGLCSLRPREDKLTFAAVFE
MDDKANVQKEWFGRTIIHSDRRFTYEEAQASIETGLGDLVQELQKLNDLAKKLRKERFNK
GAVNFETTEVKFKLDEKGKPLGIIPKVRTDAHKLIEEFMLLANRKVAAFVYEMKKGEDKN
TFVYRTHDYPNPEKVDSFAQFAKKFGHDLKTDQGSISQSLNSLMTTIEGRPEENVLQQLA
IRSMAKAKYTTEAMGHFGLAFKHYTHFTSPIRRYPDMMVHRLLQHYLDKGKSVDKKDFEE
KCIHSSEREKRAADAERASIKYKQVEFMQSVEDRIFDGIISGVTEWGIFVEIVETKCEGM
VRMVDMKDDYYEFDEKNYRVFGRRNKKMYTLGDKVHVTVKSTDIDRRTIDLEFADKKDMV
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaaaagaaaagaaaaaagaagaaccatggaaaatccggaggtattaaagaaaaa
ctgaatgccaggattctttcgcttcttaatagtaattataataaagtatatacagcaagt
caggtagccaaaaagctaggctaccgaagaaaagattataacagagagataccctatgtg
ctttcagacctgcacagaagcggcaagatcattcaactcaccaatggaagttataaaagt
gtgagtgaagcggaatttctcattggtaaacttgaccatgtcaatccccgctttgcttat
ctattaacaccggatgacaaagaagatgtctacataaaagctcaggatatcaactttgca
atggacggtgatacggtaaaggtacagcttaaaggtgctggagatggacgaaagccagaa
ggcagagtagttgagatcgtagaacgggcgagagagcaatttgtaggacgaatagagttt
tcaccacggttcgcatttgttattgcggacaataaaaagatccaccaggatatattcgta
aagcttgatgccacgcatggagccaggcataacgataaggtaatagtaaaagttacccaa
tggcctgcacatgataaaagccctgaaggtgaaatcgtaaatgtgctggggccggcaggt
gacaatgaagccgaaatacattcaataatggctgagtttgatctgccctttgaatttccc
gaacatattgaacaggaagctgagaaaatttcggataagatcaccaaaaacgagatcgag
aagagaagagatttcagagatgtgctgacctttacgatagatcctgaagacgctaaggat
tttgatgatgcactttctttccaggttttggagaatggtaattacgaaataggcatccac
atagctgacgttacgcattacgtattgcccaataccacactagaaaaagaagcatttgac
agggccacgtctgtatatctggtagatcgtaccgtacctatgctgccggagaggctttca
aatggactttgttcactgaggccacgagaagacaagctgacatttgcagcggtttttgag
atggatgataaagccaatgtgcagaaagagtggtttggaagaacgataatacactcagat
cgcagatttacctacgaagaagcacaggcaagtatagaaacaggccttggagatttagtt
caggagcttcaaaaactcaatgacctcgccaaaaagcttagaaaagagaggttcaataaa
ggagccgttaattttgagaccacggaggtcaagtttaaacttgacgaaaaaggtaagcca
ttggggattatcccaaaagtgcgaacagatgcacataaacttattgaagagttcatgctg
ttggcgaatagaaaagtagctgcctttgtatatgaaatgaagaaaggtgaagataaaaac
acctttgtgtatcggacccacgattacccgaaccctgaaaaagttgactcttttgcacaa
tttgccaaaaagtttggtcacgatcttaaaactgaccagggctctatttctcagtcactt
aatagcctgatgacaactatagagggaagaccggaggagaatgtgttgcagcaactggcc
attaggtccatggctaaagcaaaatatacaacagaggccatgggtcatttcggcctggca
tttaagcattatacgcacttcacatcaccgatcaggaggtaccctgatatgatggtgcac
cggcttttgcagcactaccttgacaaaggtaaatctgtagataaaaaagactttgaagaa
aaatgtatccactcatctgaaagagaaaaaagagcggcagatgccgagcgggcctccatt
aaatataagcaggtagagtttatgcaaagtgtagaagatcgcatttttgatggtattata
tcaggcgttacagagtggggtatttttgttgagattgtggaaaccaaatgtgaaggtatg
gtgcgtatggtagacatgaaggacgattactatgaatttgatgagaaaaactatcgcgtg
tttggacggagaaataagaagatgtatacgctgggagacaaagtacatgttaccgtcaaa
agcactgatattgatagaagaaccattgatcttgaatttgccgataagaaggatatggtt
tag
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