Fulvivirga ulvae: LVD17_17815
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Entry
LVD17_17815 CDS
T09269
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
fua
Fulvivirga ulvae
Brite
KEGG Orthology (KO) [BR:
fua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fua03016
]
LVD17_17815
Enzymes [BR:
fua01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
LVD17_17815
Transfer RNA biogenesis [BR:
fua03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
LVD17_17815
Prokaryotic type
tRNA splicing ligases
LVD17_17815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UII30154
LinkDB
All DBs
Position
4178644..4180050
Genome browser
AA seq
468 aa
AA seq
DB search
MGKSKLKGKDLRKINYSNNQAISLAVDIISKHYKHSLKEEQLTLLHDVKQRYTEYLDHEH
WSVLAREFQPVEVLKEKSEIPLLKDSGQFHVFGRKHITSNAYQQMELAMRLPIARKGAMM
PDAHQGYGLPIGGVLATENAVIPYGVGLDIGCRMSLSIYDLNSRYLQKHAYQFKTALKER
TNFGTGGELGIAQEHEILDRAEFGATSLLKQLHGKAVKQLGTSGSGNHFVEFGLVSLKQD
NELGLPAGEYIGLLSHSGSRGLGASIAKHYMGIAMEKCLLPKSARHLAWLDLSTEEGQEY
WLSMTLAGDYAKACHDQIHYHLSKYLGIKPVVNIENHHNFAWKEKQVDGEELIVHRKGAT
PASEGELGIIPGSMTAPGFIVRGKGHEGALQSASHGAGRKMSRQAARESISGSAMKKLLS
EHKVTLIGGGTDEAPVAYKNIEEVMKSQKELVEVIGQFLPKIVRMDKN
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgggcaagagtaaactaaagggtaaagaccttaggaaaattaattattcaaataatcag
gccattagtttggctgttgatatcatttcaaaacattataaacattccttgaaagaggag
caattaacattactacatgatgtaaaacaacgctatacagagtatctggatcacgagcat
tggagcgtattggcccgggagtttcaacctgtggaagtgctgaaggagaaatctgaaata
ccactgcttaaagacagtggtcagtttcatgtatttggccgaaagcatatcaccagcaat
gcctatcagcaaatggagctggccatgaggctgcccattgccagaaaaggagcaatgatg
cctgatgcgcatcagggctatggtctgcctatcggcggagtactggctactgaaaatgct
gtgataccttacggtgtaggcctggacataggctgtagaatgagtctcagtatctatgat
ctgaactcaagatacctgcaaaaacatgcctatcagttcaaaacagcactgaaagagaga
accaattttggtacaggaggtgagctgggtattgctcaggagcatgaaatactggatcgt
gcagagtttggagcaacgagccttctaaagcagcttcacggaaaagccgtcaagcaattg
ggtacatcgggttccgggaatcattttgtggagtttgggctggtcagtttgaagcaggac
aatgagctgggcttgcctgcgggagaatacattggtttgttgtcacactccggttcacgt
ggtttgggagcttccatagctaagcactacatgggtattgctatggagaagtgcctgcta
ccaaaaagtgcccggcatctagcctggctcgatctgtcaacagaagaagggcaggaatac
tggctgtctatgactctggcaggagactatgccaaggcatgtcatgatcagatacattat
catttaagtaagtacttgggcattaagccagtggtcaatattgagaaccatcacaatttc
gcatggaaggaaaagcaggtggacggtgaagagctgattgttcaccgaaagggagcaact
ccggccagcgaaggtgagttgggaatcatacccggctcgatgaccgcaccgggctttatc
gttagaggtaagggccatgagggtgctttgcaaagcgcatcgcatggcgcaggaaggaag
atgtcacggcaagctgccagagagtctatttctggcagcgctatgaaaaagttactcagc
gagcacaaagtcactcttataggaggagggacagatgaggcccctgtagcttacaaaaac
atcgaggaggtgatgaagagccagaaggaactggttgaggttatcggccagtttttgcca
aaaattgtgaggatggacaaaaattaa
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