Fulvivirga ulvae: LVD17_22855
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Entry
LVD17_22855 CDS
T09269
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
fua
Fulvivirga ulvae
Brite
KEGG Orthology (KO) [BR:
fua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fua03016
]
LVD17_22855
Enzymes [BR:
fua01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
LVD17_22855
Transfer RNA biogenesis [BR:
fua03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
LVD17_22855
Prokaryotic type
tRNA splicing ligases
LVD17_22855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UII31136
LinkDB
All DBs
Position
5425281..5426702
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AA seq
473 aa
AA seq
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MATTKISGRELRKLGYPEGKVIGIAMKVLEEKYKGKSKKQKLELLAQVVKNPEFYLKHDS
LAPVAKSLIIKTEHNETVELNKNRLDYRIYGAEGIEPGAINQMEIAMKLPVTKAGALMPD
AHQGYGLPIGGVLATDNAVIPYAVGVDIGCRMCMTLYDIRPEFIEQNGFKLKKMLIDNTR
FGNEVFRQPVDHEVLERSAFNEINILKSLKDRAYSQIGSSGGGNHFVEFGIGEIMEADNE
WGLPTGRYLAVLSHSGSRGLGANVARHYTRLAMDKCRLPKEARHLAWLGLDTDDGAEYWN
AMNLAGDYASACHHQIHERLSATLGEKPLMMVENHHNFAWKESDRFGNEVIVHRKGATPA
EKGVLGIIPGSMTAPGFIVRGKGLADSLNSASHGAGRVMSRRKAKETLSKREVDEHLKKA
GIEVIGSGLDEAPMVYKDIHQVMSYQTALVEILGTFTPRIVRMCGDKRFGEVD
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atggcaactacaaagatatcaggaagggagttgagaaaacttggctatcctgaaggtaag
gtaataggcatagccatgaaggtgcttgaagaaaaatacaaaggcaagagtaaaaagcaa
aagctagagctacttgcgcaggtagtaaaaaatcctgagttctatcttaagcatgattca
ctggcgcctgttgccaaaagcctgattataaaaacagagcataatgagacggtggagcta
aacaaaaacagacttgactatcgtatctacggtgctgaagggatagaaccaggcgccatc
aaccagatggaaatagccatgaagctccctgttaccaaagccggtgctttgatgccagat
gcccaccagggatatggcttgccaataggtggcgttctggctacggacaatgcggttatc
ccctatgcagtgggtgtcgatattggctgcagaatgtgtatgacgctgtatgacatccgg
ccggagtttattgaacaaaacggatttaagctaaaaaaaatgctaatagataatacccgt
ttcggcaatgaagtatttagacagccggtagatcatgaagtgctggaaagaagtgctttc
aatgagatcaatatcctgaaatccttaaaagacagggcttacagccagatcggtagttct
ggtggtggtaaccactttgttgaatttggcataggtgagattatggaagctgataatgaa
tggggattacctaccggcagatacctggcagtactctcccactctggttcccgcggtctg
ggcgccaatgtggcgcggcattataccagactggccatggacaagtgcaggcttcctaaa
gaagcgcgtcacctggcctggctcggattggatacagacgatggcgcagagtactggaat
gccatgaacctggcaggcgattatgcctcagcatgtcatcatcagatccatgaacggctt
tctgcaacattgggggagaaaccactgatgatggttgaaaatcaccacaattttgcatgg
aaagagtcagaccgctttggcaatgaggtgattgttcatcgtaaaggggctacaccggca
gagaaaggagtactgggaattattccgggctcaatgactgctccaggctttatcgtccgg
ggcaaggggctggctgactcgcttaactcagcctctcacggtgccggccgggtgatgtcg
cggagaaaggccaaggaaacgttatccaaaagggaggtggatgagcacctgaaaaaggct
ggcattgaagttattggctcgggactggatgaagcgcctatggtttataaggacatccat
caggttatgtcttatcaaacagcgcttgtagagatattaggtactttcaccccccgaatt
gtaagaatgtgtggggacaaaaggtttggtgaggtagactaa
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