Fulvivirga ulvae: LVD17_24340
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Entry
LVD17_24340 CDS
T09269
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fua
Fulvivirga ulvae
Pathway
fua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LVD17_24340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fua03019
]
LVD17_24340
03009 Ribosome biogenesis [BR:
fua03009
]
LVD17_24340
Enzymes [BR:
fua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LVD17_24340
Messenger RNA biogenesis [BR:
fua03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LVD17_24340
Ribosome biogenesis [BR:
fua03009
]
Prokaryotic type
rRNA helicases
LVD17_24340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
NAT10_TcmA_helicase
AAA_30
HEM4
Motif
Other DBs
NCBI-ProteinID:
UII31426
LinkDB
All DBs
Position
complement(5787154..5788878)
Genome browser
AA seq
574 aa
AA seq
DB search
MTNFSDLGLSPSLLKVLPELNLETPTKIQQKAIPILINEADRDFIGLAQTGTGKTAAFGL
PLLDAIDVDAKGTQALVLAPTRELGQQIAQQIQAFSKYLKGVRVQVVYGGAAITPQIKAL
KNTPHIIIATPGRLLDLIKRKAINLSAVKHVVFDEADEMLNMGFRDDIDDILSYTQGEKS
TWLFSATMAGEIRDIVNKYMNNPSEVKIDTGTLVNQNIDHQYFVTKAKDKTNLLERIIEL
EPDMRGIVFCRTKRDTQELAQQLQSKGLPVDAIHGDLSQSQRDQVMKRFKNHSLEFLIAT
DVAARGIDVNDLTHVIHHSIPDDLEYYTHRSGRTGRAGKKGISLAIVTSSEQRKLKSLEK
RLKLNFTPYQLPSAVKVQNEKLQSWAKNIALLDIDTDAVLPHKDDVEPIFASLSKSELID
KLIMTQLNSMGISTSTTNFEQDFDKNDRGGKSEKRSSSGGRYERFFINVGAIDGYDKKDL
INLVIEKTGISKSAVGPVTMEDRRAYFEVEREVARSVEPAFRGMELDGREIRVNGADTGG
KRNSRSSKRLHDHRSGYKRGDRNDRSGRKGKRKR
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaatttttcagatttaggactttctccatcgttgttgaaggttcttccggagtta
aatctagaaactccaacaaagattcagcaaaaagctattcccatacttattaacgaagcc
gacagagatttcattggacttgcccagacaggtaccggtaaaacagcagctttcgggctt
cctctgctggatgcaatagatgttgatgccaaaggtacccaggcactggtgttggctcct
accagagagttagggcagcaaattgctcagcaaatccaggcattttccaaatacttaaag
ggggtgagggttcaggttgtatatggtggagctgccattacaccgcagatcaaagcttta
aaaaatactcctcacattattattgccactccgggcaggttgcttgaccttattaaaaga
aaagctattaatctcagcgctgtaaaacatgtagtgtttgatgaagccgatgaaatgttg
aatatgggctttagagatgatattgatgatatactttcatatacccagggagagaaatca
acgtggcttttctctgctactatggccggagagatccgtgatatcgtgaataaatatatg
aataaccccagtgaggtgaaaattgataccggcaccctggttaatcagaatattgatcat
cagtactttgtaaccaaggctaaggataaaaccaacttactggagcggatcattgagctg
gagcctgatatgagaggtattgtgttttgcagaacaaaacgggacacacaggagctggca
caacagttacagtccaaaggcctgcctgtagatgccatccatggcgatttgtcgcaaagc
cagagagatcaggtaatgaaacgcttcaaaaatcattcgcttgaatttctgatagctacc
gatgtagctgccagagggatagatgttaatgacctgacgcacgttatccatcactccata
cctgatgatctggagtattatactcaccgaagtggccgtacagggcgggccgggaaaaag
ggtatttccctggctatagtcacatcatctgaacagcgtaagctgaaatcattggagaaa
aggctgaagttaaacttcacgccctatcagctgccaagtgctgtaaaagtacaaaatgaa
aaattacaatcatgggcaaagaatattgccctgcttgatatagataccgatgcagtgctg
ccccataaggacgatgtagaaccaatattcgccagcctttccaaatcggagttgattgat
aagttgattatgacccagctgaacagtatgggtattagcacatctacgactaatttcgaa
caggactttgataaaaatgaccgtggcggtaaatccgaaaaaagaagctcttcaggagga
cgatacgaaaggtttttcatcaatgtaggagccattgacgggtatgataaaaaggacctc
atcaacctggtaattgaaaagacaggtatttccaagtcagccgtgggccctgttaccatg
gaagaccgcagggcctattttgaggtggagcgcgaagttgccaggtcagtagagccggct
ttccgtgggatggaacttgatggccgggaaattcgcgttaatggtgcggatacaggaggg
aaaagaaactccagaagtagtaaaagacttcatgatcatcggtctggctataagagaggc
gaccgaaacgatcgctcgggaagaaaaggcaaaagaaaaagataa
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