Fusobacterium ulcerans: C4N20_06250
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Entry
C4N20_06250 CDS
T05433
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ful
Fusobacterium ulcerans
Pathway
ful03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ful00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C4N20_06250 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ful03400
]
C4N20_06250 (mfd)
Enzymes [BR:
ful01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C4N20_06250 (mfd)
DNA repair and recombination proteins [BR:
ful03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C4N20_06250 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
SNF2-rel_dom
Cas3-like_C_2
AAA_22
UB2H
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AVQ27698
UniProt:
A0AAX2JEW7
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All DBs
Position
1369971..1372922
Genome browser
AA seq
983 aa
AA seq
DB search
MITEYRGRIPFLLKDIKGNIVYLCSSNKNIEDYYNTLSDFYDGKILKIESSYENEEFEKL
NYDLLKLLKSKNKFAILISLEAFLRDYALEGDKLSFKKGKEMSIAKIQEDLVRNKYDKVY
MIEKRMQYSVRGDILDIFSSDGDYPVRIEFFGDEIERIAYFDLESQKSIEILDSINVYIN
NNKNGKISFFDLVKNSKTKGLKIYFENNELLRYKLEENIIREREEEEKFRGRFNELLETG
EEVEIKRFSEEEIKKFEDYDYIKKLSQKENILLMSEEEKRYKEIFENYNIEIERYPHYEG
YREKDRLILTDRELKGIKVKREAKEKVNLKYKDVSQIRENDFIIHENYGVGIYQGIETMN
GQDYLKIKYADEDKLFVPVEGINKIEKYVSTPGVIPDIYQLGRRGFKRKRQKLEEEMVAF
AKEIIEIQAKRAFEKGYAFSHDTVWQEEFEESFPYKETASQLKAIEDVKRDMESDRIMDR
VVCGDVGYGKTEIALRAAFKASIDGKQVVVMVPTTVLAQQHYERFTERFKNYPVSIEILS
RLKSEKEQKEVLKKISAGTIDIVIGTHRILSSDVKFKDLGLVVIDEEQKFGVKAKEQLKK
LKNKIDMITLTATPIPRTLNLSLLGIRDLSVIDTPPEGRKPIETMFIDKDDKKLKEIIMS
EIAREGQVFYIFNSVKNIEKKTHELRKLLPNYLKLDYIHGQMLPKEIKNKIKDFENGDID
MLISTTIIENGIDIENANTMIIDGVEKLGLSQIYQLRGRIGRGRRKGYCYLLTKEHQTKK
AKEREESIKNLGDSGGGFQLSLEDMRIRGAGEILGDKQHGALETFGYNLYIKMLNEEIQR
IKGNAPEEEVEMEIKIDMPAFIPDEYIEKDEKIVIYRRAAELKTQEELKELESEVRDRFG
NPPREVVNLFYYIGVKIKARELGISVIRQEKNGFFVRFLSEKVNIEKISQMMTMGNLKYL
NREEGVFYRGNINRFFNEYEGVM
NT seq
2952 nt
NT seq
+upstream
nt +downstream
nt
atgataacagaatatagaggaaggatacctttcctgctcaaagacataaaaggaaacata
gtatatctatgctcatccaacaagaacattgaggattattataataccctcagtgatttt
tatgatggaaaaattttaaaaattgaaagcagttatgaaaatgaggaatttgaaaaactt
aattatgaccttcttaaacttttaaaatctaaaaataaatttgctatactcatatcttta
gaagcatttctcagagactatgcactagagggagataaactttcttttaaaaaagggaag
gagatgagcatagctaaaatacaggaagatcttgtaagaaataaatatgataaagtatat
atgattgaaaaaagaatgcagtacagtgtaagaggggatattttagatatcttttcaagt
gatggagactatcctgtaagaattgaattttttggagatgagatagagagaatagcatat
tttgatcttgaaagccaaaagagtatagaaatacttgatagtatcaatgtgtatataaac
aataataagaatggaaaaatatctttttttgatttggttaaaaacagcaaaacaaaaggt
ttaaagatatattttgaaaataatgaattgttgagatataaattagaagaaaatataatt
agagagagagaagaagaagaaaagtttcgaggaagatttaatgaacttctggaaacaggt
gaggaagtagagataaaaagattctcagaggaagagataaagaaatttgaggactatgat
tatataaaaaaattgagtcagaaagaaaatatacttctgatgtcagaagaggaaaagaga
tataaagaaatatttgaaaattataatattgagatagagagatatcctcactatgaagga
tatagagaaaaagacagactgattctcactgacagagagctaaaaggaatcaaggtaaaa
agagaagcaaaggaaaaggtaaatttaaaatataaagatgtatctcaaatcagagaaaat
gactttataattcatgaaaattatggagtaggtatctatcaagggatagaaactatgaat
ggacaggattatttaaagataaagtatgctgatgaagataagctttttgtaccagttgaa
ggcataaataaaattgaaaagtatgtatctactcctggagtaattcctgatatatatcaa
ttagggagaagagggtttaaaagaaaaagacagaagctggaagaggaaatggtagctttt
gctaaagaaatcattgagatacaggcaaagagagcttttgaaaagggatatgctttttct
catgatacagtgtggcaggaggaatttgaagaaagttttccatataaagagacagcttca
caattaaaagctatagaagatgtcaaaagagatatggaatcagatagaataatggatagg
gtagtctgtggagatgtgggatatggtaagacagagatagctttgagagcagcttttaaa
gcgtccatagatgggaaacaggtagttgttatggtgcctaccacagtacttgcacaacag
cattatgagagatttacagaaagattcaaaaactatcctgtaagtattgaaatattgagc
agattaaaaagtgaaaaagagcagaaagaggtacttaaaaaaatatcagcaggaactatt
gatatagtaataggtactcacagaatactttcatcagatgtaaaatttaaagatttaggt
cttgtggtaatagacgaagaacagaaatttggtgtaaaagctaaggaacagctgaaaaaa
ctgaaaaataaaatagatatgataacccttacagcgacacctattccaagaacattgaac
ctttcattgttgggaataagagatctttctgtaatagatacacctccagaaggaagaaag
cctattgagacaatgtttatagataaagatgataaaaaactaaaagagataatcatgagt
gaaatagccagagaaggtcaggttttctatatattcaattctgtgaaaaatatagaaaag
aagactcatgagcttagaaaacttcttccaaattatctgaaactggactatattcatgga
cagatgcttccaaaagagataaaaaacaagataaaagattttgaaaatggggatatagat
atgctcatatccactactataattgaaaatggtatagatatagaaaatgcaaatactatg
ataatagatggagtggaaaaactgggattgtcacagatatatcagctgagagggcgtata
ggaagaggaaggagaaagggatactgctatcttcttactaaagagcatcagacaaagaaa
gctaaagaaagagaagaatctattaaaaatctgggagattcaggtggaggattccagcta
tctcttgaagatatgagaataaggggagctggagagatacttggagacaagcagcatgga
gctcttgagactttcggatataacttgtatataaaaatgctgaatgaagagatacagcgt
atcaaaggaaatgctccagaagaagaggtagagatggagataaaaatagatatgccagca
tttattcctgatgaatatatagaaaaagatgaaaagatagtgatttacagaagagcagct
gaattaaaaactcaagaggaattaaaagaacttgagtctgaagtaagggatagatttgga
aatcctccaagagaggtagtaaatcttttctactatataggagttaagattaaagctaga
gagctgggaatttctgtaataagacaggaaaaaaatgggttctttgtaagatttttaagt
gaaaaagtaaatatagaaaaaatatctcaaatgatgacaatgggaaatctaaaatatctc
aatagagaggaaggggtattctatagagggaatatcaatagattttttaatgagtatgag
ggagtgatgtaa
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