Fusobacterium ulcerans: C4N20_06905
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Entry
C4N20_06905 CDS
T05433
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ful
Fusobacterium ulcerans
Pathway
ful02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ful00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
C4N20_06905 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ful03021
]
C4N20_06905 (rpoD)
Transcription machinery [BR:
ful03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
C4N20_06905 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Pox_Ag35
Motif
Other DBs
NCBI-ProteinID:
AVQ27814
UniProt:
A0AAX1TNC1
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All DBs
Position
1486542..1487798
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AA seq
418 aa
AA seq
DB search
MREFIKNEKVLSLVRKAMENKFITYEEINEELKSDFPVEKIEQLITGMMEQGIEIVRQED
LEKEKKLAASLKKDKDKDKDKDEEPISKTQDKEEFPDEDEIDDLLEERTEDLDDFEHFNP
EELEEINEDELVSDDLFNLSGDMKVDEPIKMYLREIGQIPLLSHDEELEYAKRALEGDDW
ASKQLIEANLRLVVSIAKKHTNRGLKLLDLIQEGNIGLMKAVEKFEYSKGYKFSTYATWW
IRQAITRAIADQGRTIRIPVHMIETINKIKKEARIYLQETGKDATPEVLGERLGMEVDKV
KAIQEMNQDPISLETPVGSEEDSELGDFVEDHKMLNPYELTNRSLLREQLNGVLNTLSSR
EERVLRYRYGLDDGSPKTLEEVGKIFKVTRERIRQIEVKALRKLRHPSRRKKLEDFKV
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgagagagtttataaaaaatgagaaggttctttctttagtcagaaaagcgatggaaaat
aagtttataacttatgaagagataaatgaggaattaaaaagtgattttccagtagaaaaa
attgagcagctgataacaggaatgatggaacaagggatcgagattgtaagacaagaagat
ctggaaaaagaaaagaaacttgcagcatctttgaaaaaagataaagataaggacaaagat
aaagatgaagaacctatttcaaaaactcaagataaagaggaatttcctgatgaagatgaa
atagatgaccttttagaagagagaacagaagatttagatgactttgaacatttcaaccca
gaagaattggaggaaataaatgaagatgaacttgtaagtgatgatttgtttaatctttca
ggggatatgaaagtagatgaacctattaaaatgtatcttcgtgaaataggacagattcca
cttcttagtcatgatgaagaattagaatatgctaagagagcattagaaggagacgactgg
gcaagtaaacagctgatagaggcaaaccttagactagttgtaagtatagctaaaaaacat
actaatagaggtcttaaacttcttgatctgattcaagagggaaatatagggctgatgaaa
gcagttgaaaaatttgaatacagtaaaggatataaattttctacatatgctacttggtgg
ataagacaagctataacaagagctattgctgaccagggtagaacaataagaataccagta
cacatgatagaaactatcaacaagataaaaaaagaagcaagaatttatttgcaagaaaca
ggtaaagatgctactccagaagttttaggtgaaagattgggaatggaagtagacaaggta
aaagctattcaggaaatgaaccaagatccgatatctcttgaaactccagtaggaagtgaa
gaagatagtgaattaggagactttgttgaagatcataaaatgcttaatccatacgaactt
acaaatagatctcttcttagagagcagcttaatggggtattaaatactcttagcagcaga
gaagaaagagtattgagatatagatatggtctagatgatggatcaccaaaaactctggaa
gaagtaggaaaaatatttaaagtaacaagagagagaataagacagatagaagtcaaagcc
ttgagaaaacttagacatccaagcagaagaaaaaaactggaagactttaaagtgtaa
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