Fundidesulfovibrio sp. YSD1: YSD1_09100
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Entry
YSD1_09100 CDS
T11982
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
fun Fundidesulfovibrio sp. YSD1
Pathway
fun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YSD1_09100 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fun03021
]
YSD1_09100 (rho)
03019 Messenger RNA biogenesis [BR:
fun03019
]
YSD1_09100 (rho)
Transcription machinery [BR:
fun03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
YSD1_09100 (rho)
Messenger RNA biogenesis [BR:
fun03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
YSD1_09100 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_22
AAA
Fan1_SAP
NACHT
ATPase_2
OB_RNB
AAA_2
Mor
AAA_25
S1CSD-TOTE-2
AAA_14
Motif
Other DBs
NCBI-ProteinID:
BGX38654
LinkDB
All DBs
Position
976000..977247
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AA seq
415 aa
AA seq
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MNLSDLKLKSMPELMELAAQFNVENPSGMRKQELIFGILQNCASQNGSIFGEGVLEILPD
GFGFLRSPMYSYMPGPDDIYVSPSQIRRFGLRKGDVVSGQIRPPKEGERYFALLRVSEIC
FQPPEASKNIVLFDNLTPLYPNRRIVMENGDKNYSSRVIDLLAPIGQGQRGLIVAPPRTG
KTMLLQTIANSINANHPDVYLIVLLIDERPEEVTDMERTVRAEVVSSTFDEPPQRHVQVA
EMVMEKAKRLVERKRDVVVLLDSITRLGRAYNAVTPSSGRVLSGGLDANALQRPKRFFGA
ARNLEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNMELYLDRHLSEKRIYPAIDINRS
GTRKEELLLPEDQLNRVWILRKFLSPMSPIDSMEFLLDKMRGTKSNKEFLDMMNR
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgaacctatcggatctcaaactcaagagcatgcccgaactcatggaattggccgcccaa
ttcaacgtcgagaacccgagcggcatgcgcaagcaggaactgatcttcggcatcctgcag
aactgcgcctcccagaacggctccatcttcggcgagggcgtgctggaaatcctccccgac
ggattcggcttcctgcgctcgcccatgtacagctacatgccgggcccggacgacatctac
gtgtcgccctcgcagatccgccgcttcggcctgcgcaagggcgacgtggtctccggccag
atcaggccccccaaggagggcgagcgctacttcgccctgctgcgcgtctccgagatctgc
ttccagccgcccgaggcctcgaagaacatcgtgctcttcgacaacctcaccccgctctac
cccaaccgccgcatcgtgatggagaacggggacaagaactactcctcgcgcgtcatcgac
ctgctggcccccatcggccagggacagcgcggcctgatcgtggccccgccccgcacgggc
aagaccatgctcctgcagaccatcgccaactccatcaacgccaaccatcccgacgtctac
cttatcgtgctgctcatcgacgagcgccccgaggaagtcacggacatggagcgcacggtc
agggccgaggtggtcagctccaccttcgacgagccgccccagcgccacgtgcaggtggcc
gagatggtcatggagaaggccaagcgcctggtggagcgcaagcgcgacgtggtggtgctg
ctggactccatcacccgcctgggccgcgcctacaacgccgtgaccccctcctcgggccgc
gtgctctccggcggcctggacgccaacgccctgcagcgccccaagcgcttcttcggcgcg
gcgcgcaacctggaggaaggcggctcgctgaccatcatcgccaccgcgctcatcgacacg
ggttcgcgcatggacgaggtgatcttcgaagagttcaagggcaccggcaacatggaactc
tacctggaccgccacctctccgagaagcgcatctaccccgccatcgacatcaaccgctcc
ggcacccgcaaggaagaactgctcctgcccgaggatcagctcaaccgcgtgtggattctg
cgcaagttcctctcgcccatgagccccatcgactccatggagttcctcctggacaagatg
cgcggcaccaagagcaacaaggaatttttggacatgatgaaccgctag
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