Fusobacterium animalis 4_8: HMPREF0409_01124
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Entry
HMPREF0409_01124 CDS
T02680
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
fus
Fusobacterium animalis 4_8
Pathway
fus03410
Base excision repair
fus03430
Mismatch repair
fus03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HMPREF0409_01124
03430 Mismatch repair
HMPREF0409_01124
03440 Homologous recombination
HMPREF0409_01124
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fus03400
]
HMPREF0409_01124
DNA repair and recombination proteins [BR:
fus03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HMPREF0409_01124
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HMPREF0409_01124
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HMPREF0409_01124
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
DUF2278
PBP2_Ca3427_like
DUF8786
Motif
Other DBs
NCBI-ProteinID:
AGM23066
UniProt:
R9R926
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All DBs
Position
638968..641502
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AA seq
844 aa
AA seq
DB search
MKKNTKWILENKTNYEKIFENKREKKLDFIIEDLIENRNLSLDTNFDFNPFDLKDMDIAT
QRIFEAIKSNQKIYIYGDYDVDGITSVSLLYLALSELGANVDYYIPLRDEGYGLNKEAIQ
TLKNENADLVISVDCGINSIEEINFANELNLDFIITDHHEITGDIPKALAVINPKRDENI
YSFKYLAGVGTAFMLVYALYTQMNKLNDLEKYLDIVAIGTVADIVPLVSDNRKFVKRGLK
LLNTTKWIGIKQLLRKIFPDNWDTKEYFAYDVGYIIAPIFNAAGRLEDAKQAVSLFVEED
GFKCLSIIDKLLENNIERKNIQKKILEMSVTEIEKKQLYNKNLILVANKSFHHGVIGIVA
SKILDKYYKPTIIMEIKENEGVATASCRSIDGVNIVECLNFVSDILVKYGGHSGAAGFTV
KIENIEEFYQRVDKYIEENFNKDLFIKKLKIEKILAPYKVNYEFLKELEILEPYGAKNHT
PIFAFRNCEYENLRFTRNSTEHLMLDIKKDGYYFKNCIFFGGGDYYDIISSSKSIDIAFK
LKLETFKDRYMYKLQLEDIKNSNDNIDFQDDYLELNGKDISFPIETVVYPKRPDIEEPLN
LIFNDYGVAITKDRTIIENIDSNLAKILTILKNKFNYEFSVKIKKKYLKSENINLHLEID
VIKDRGLKSFPLKDALIFKEIKNLLIRDFEYNSIQKKVLASIFKDKKKTLAIIDRKRGTT
TIIDTIKFYCKYRNLKLSINNEKEKADFYIFENFTEIEKINSLLTNNILIISNKNVEVNN
FNKIIDDYSIPKNIEYVDYSNISILKGNNNLYYPFLTNEEKLNILDLIKRNKVIFSTREI
IVHF
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaaatacaaaatggattttagaaaataaaactaattatgaaaaaatatttgaa
aataaaagagaaaagaaattagattttattattgaagatttaattgagaatagaaatcta
tctcttgatacaaattttgattttaatccttttgatttaaaggatatggatatagccact
caaagaatttttgaggctataaaaagtaatcaaaaaatttatatctatggagattatgat
gtagatggaataacatcagtttctcttttatatttagcactttctgagttaggtgcaaat
gtagactattatatacctttaagagatgaaggctatggattaaataaggaagctatacaa
actttaaaaaatgaaaatgcagatttagttattagtgtagattgtggaattaattcaata
gaagaaattaattttgctaatgaattaaatttagattttataataacagatcatcatgaa
ataactggtgatattccaaaagctcttgctgttataaatcctaaaagagacgaaaatata
tattcttttaaatatcttgcaggtgtgggaactgcttttatgttagtctatgctttatat
acccaaatgaataaattgaatgatttagaaaaatatttagatattgttgcaataggtact
gttgcagatatagttcctttagtttcagataatagaaaatttgtaaaaagaggtttaaaa
cttttaaatactactaaatggataggtattaaacaattacttagaaaaatatttcctgat
aactgggatacaaaagagtattttgcctatgatgtgggttatattattgcaccaatcttt
aatgctgctggtcgtttagaagatgcaaaacaagcagtaagtttatttgttgaggaagat
ggttttaaatgtctttcaattatagataaacttttagaaaataatattgaaagaaaaaat
atacaaaaaaagattttagaaatgtctgttactgaaattgaaaaaaaacaattatataat
aaaaatttaattttggttgcaaataaatcttttcatcatggagttattggaatagttgct
tcaaaaattttagataaatattataagccaactataattatggaaatcaaggaaaacgaa
ggagtagcaactgcttcttgtagaagtattgatggtgtaaatatagttgaatgtttaaat
tttgtttcagatattttagttaaatatggaggacattcaggtgcagcaggctttacagtt
aaaatagaaaatatagaagaattttaccaaagagtagataaatatattgaagaaaatttt
aataaagatttattcataaagaaattaaaaatagaaaaaatcttagcaccttataaagta
aactatgaatttttaaaagagttagaaatcttagagccttatggagctaaaaatcatact
cctatttttgcttttagaaattgtgaatatgagaatttaagatttacaagaaacagtaca
gaacatctgatgttagatataaaaaaagatggttattattttaaaaactgtatatttttt
ggtggaggagattattatgatattatttcaagttcaaaaagtattgatatagcttttaaa
ttaaaactagaaacttttaaagatagatatatgtataaattacaacttgaagatattaaa
aattccaatgataatattgattttcaagatgattatttagaattaaatgggaaagatatt
tcttttccaatagaaactgttgtatatccaaaaagaccagatatagaagaacctttaaat
ttaattttcaatgactatggagtagctataacaaaagatagaacaattatagaaaatata
gatagcaatttagcaaaaattttaactattttaaaaaataaatttaattatgaattttct
gtgaaaataaaaaagaaatatttaaaaagtgaaaatataaatttacatttagaaattgat
gtaataaaagataggggactaaaatcttttcctttaaaagatgctttaatattcaaagag
ataaaaaatcttctaattagggattttgaatataattccatacagaaaaaagtacttgcc
tctatttttaaagataagaaaaaaactttggctatcatagatagaaaaagaggaacaacg
acaataattgacactattaaattttattgtaaatataggaatttaaaactttctataaat
aatgagaaagaaaaagcagatttttatatttttgaaaattttactgaaatagaaaaaatc
aattctctattgacaaataatatccttataatttcaaataaaaatgttgaagttaataat
tttaataaaattatagatgattattctatacctaagaatattgaatatgttgattatagt
aatataagtattttaaaaggaaataataatttatattatccatttttaactaatgaagaa
aaattaaatattttagatttaataaagagaaataaagttatattttccacaagagaaata
attgtacatttttaa
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