Fusobacterium animalis 4_8: HMPREF0409_01817
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Entry
HMPREF0409_01817 CDS
T02680
Name
(GenBank) hypothetical protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fus
Fusobacterium animalis 4_8
Pathway
fus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMPREF0409_01817
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fus03019
]
HMPREF0409_01817
03009 Ribosome biogenesis [BR:
fus03009
]
HMPREF0409_01817
Enzymes [BR:
fus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HMPREF0409_01817
Messenger RNA biogenesis [BR:
fus03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HMPREF0409_01817
Ribosome biogenesis [BR:
fus03009
]
Prokaryotic type
rRNA helicases
HMPREF0409_01817
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
NDK
2H-SAK
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AGM24437
UniProt:
R9REC8
LinkDB
All DBs
Position
2105996..2107582
Genome browser
AA seq
528 aa
AA seq
DB search
MEQLEKLKEFRDLGLSEKVLKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKT
AAFSLPIIENFENLEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQR
KLIKTGVDVVVGTPGRVIDLIERKLLKLNSLKYFILDEADEMLNMGFVEDIEKILTFTNE
DKRMLFFSATMPEEIMKVAKNHMKEYEVLAVKSRELTTDLTEQIYFEVNERDKFEALCRI
IDLTKEFYGIIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKINIL
VATDVAARGIDINDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEYRRLLQ
IQKAVKKEIKKEKLPDVKDVIQAKKFRIIDDIGQILIDNDYDKFKKLAKDLLKMEDAENI
VASLLKLSYSDVLDESNYNEISPVKMEDTGKARLFIAMGRKDGMTPKKLVEFIVKKAKVK
QSYIKNAEVYEGFSFVSVPFKEAEIIVEAFAKNRKGKKPLIEKAKSKK
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atggaacaattagaaaaattaaaagaatttagagatttagggcttagtgaaaaggtatta
aaagtattatcaaaaaaaggatatgaatctcctacacctatacaaagattgacaatacct
gctcttttaaaaaatgataaagacataataggacaagcacaaactggaacaggtaagact
gctgctttttctttaccaataatagagaactttgaaaacttagaacatatacaagctatt
gttttaacaccaacaagagaattagctttacaagtagctgaggaaatgaatagtttaagt
acaagtaaaaagatgaaagtgattcctgtctatggtggacaatcaatagacatacaaaga
aaacttatcaaaactggtgtagatgtggttgtaggtacgcctggtagagttatagattta
attgaaagaaaattattaaaattaaattcattaaaatattttattttagatgaagcagat
gaaatgcttaatatgggttttgttgaagatatagaaaaaatattaacttttacaaatgaa
gataaaagaatgttatttttctctgcaactatgccagaagaaattatgaaagttgctaaa
aatcatatgaaagagtatgaagttttagcagttaagagtagagaacttacaacagattta
acagaacaaatttattttgaagtaaatgaaagagataaatttgaagccctatgtagaatt
atagatttaacaaaagaattctatggaataattttttgtagaacaaagactgatgtaaat
gaaattgttggaagattaaatgacagaggttatgatgctgaaggtctacatggagatata
ggtcaaaattatagagaagttactttaaaaagatttaaaactaagaaaataaatatcctt
gttgcaacagatgtggctgcaagaggtatagatatcaacgatttaagccatgttataaac
tatgctattccacaagaagttgaaagttatgtacatagaataggtagaacagggcgtgct
ggtaaagaaggaactgccataacttttattactccacaggagtatagaagacttttacaa
attcaaaaagcagttaaaaaggaaattaaaaaagagaaattacctgatgttaaagatgtt
attcaagctaaaaagtttagaataatagatgacatagggcaaattttaatagataatgat
tatgataaatttaaaaaattggctaaagacctacttaaaatggaagatgcagaaaatatt
gttgcctctcttttaaaattatcatacagtgatgttttagatgaaagcaactataatgaa
atttctcctgtcaaaatggaagatacaggtaaagcaagattatttattgctatgggtaga
aaagatggtatgacacctaagaaattggttgaatttattgttaaaaaagcaaaagtaaaa
caaagctatattaaaaatgcagaagtttatgaaggtttctcatttgtttctgttcctttt
aaagaggcagaaataatagttgaggcttttgctaaaaatagaaaaggaaagaaaccatta
atagaaaaagcaaagtctaagaaatag
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