Fusobacterium animalis 4_8: HMPREF0409_02299
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Entry
HMPREF0409_02299 CDS
T02680
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fus
Fusobacterium animalis 4_8
Pathway
fus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMPREF0409_02299
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fus03019
]
HMPREF0409_02299
03400 DNA repair and recombination proteins [BR:
fus03400
]
HMPREF0409_02299
Enzymes [BR:
fus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HMPREF0409_02299
Messenger RNA biogenesis [BR:
fus03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HMPREF0409_02299
DNA repair and recombination proteins [BR:
fus03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HMPREF0409_02299
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AGM23887
UniProt:
R9RDC3
LinkDB
All DBs
Position
complement(1505798..1507618)
Genome browser
AA seq
606 aa
AA seq
DB search
MKSEALRILKEYYGYDNFREGQEKIIDAILEKRNILGIMTTGAGKSVCYQIPALIFEGLT
IVISPLISLMKDQVDSLRLIGIEASYLNSTLTSDEYNKILFRIKRGKIKLLYISPERLEN
KFFLNFIKTVKISMVVVDEAHCVSQWGENFRRSYLRIADFVKYLGGENQIQTLAFTATAT
PKIKVDIIEKLNIVNPFVYVDYFNRDNIYFKVVDNSGLDKDLDIDSKPFIIDYLRKHKGK
SGIIYCSTRKNVDDIYNYLVGFNRSVTKYHGGMTKEERDKNQKLFLDDDVEIMVATNAFG
MGINKSNIRYVIHANIPADLESYYQEAGRAGRDGGPAEAILIYNEKDRDIQRYLMEKEAE
GKKDKNYLNKRLRNFNKMLEYVELKTCYREYILKYFGEKMIRNYCGYCENCKKEKNIKDF
SLEAKKIISGVGRAKESLGISTLANMLMGKADTKMLNKGLDKISTFGIMKENKQEWIESF
INYMISEKYLVQSAGSFPVLKLGEKYKDILNGNIKVIRKEDEKIDFDYYENDLFKELNSL
RKEISKQENIAPYIIFSDMTLIEMAEKKPRNRWDMLKIKGIGNQKFKSYGERFLERINNY
CMEERL
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatcagaagcactcagaattttaaaagaatattatggttatgataattttagagaa
ggacaagaaaaaataatagatgctatcttagagaaaagaaatatcttaggaataatgaca
acaggagcaggaaaatctgtttgttatcaaatacctgcactaatctttgaaggattgaca
atagtaatttctccattaatatctttaatgaaagaccaagtggatagtttgagattaatt
ggaatagaggcaagttacttaaattcaaccttgacaagtgatgaatataataaaatcctt
tttaggataaagagaggaaagataaaattattatatatctcaccagagagattagaaaat
aaattttttctaaattttataaaaactgtaaaaatttctatggtggtggttgatgaagca
cactgtgtatctcaatggggagaaaattttagaagaagttatttaagaatagcagatttt
gtaaaatatttaggaggagaaaaccaaattcaaactttggcttttactgctactgcaacc
cctaaaattaaagtggatataatagaaaaattaaatatagtaaatccttttgtttatgta
gattatttcaacagagataatatttattttaaagtagttgataatagtgggcttgataaa
gatttagatatagattctaaaccttttattatagattatttaagaaaacataaaggaaaa
tctggaataatatattgttcaactagaaaaaatgtagatgatatttataattatttagta
ggatttaacagaagtgttacaaaataccatggaggaatgactaaggaagaaagagataaa
aatcaaaaattatttttagatgatgatgttgaaataatggtagcaactaatgcttttggt
atgggtataaataaatctaatataagatatgtaattcatgcaaatattccagctgactta
gaaagttattatcaagaagcaggtagagctggaagagatggtggacctgctgaggctatc
cttatatacaatgagaaagatagggatattcaaagatatttaatggaaaaagaagcagag
ggaaaaaaggataaaaattatcttaataaaagattaagaaatttcaataaaatgttggaa
tatgttgaattgaaaacttgttacagagaatatattttaaagtattttggtgaaaaaatg
ataagaaattattgtggttattgtgagaactgcaaaaaagaaaaaaatatcaaagatttt
tcattagaagcaaagaaaattatttcaggtgtaggaagagcaaaagaaagtttgggaata
tctacattggctaatatgttaatgggaaaagcagacactaaaatgttaaacaaagggctt
gacaaaatttctacatttgggataatgaaagaaaataaacaggagtggatagaaagtttt
atcaattatatgatttctgaaaaatatttagtacagagtgcaggaagttttccagtttta
aaacttggtgaaaagtataaagatattttaaatggaaatataaaagtgataagaaaagaa
gatgaaaaaattgactttgattattatgaaaatgatttatttaaagaattaaattctctt
agaaaagagatttcaaagcaagaaaatattgcaccttatattattttttctgatatgact
cttatagagatggcagaaaagaaaccaagaaataggtgggatatgttaaaaataaagggt
attggcaatcaaaaatttaaaagttatggagaaaggtttttagaaagaattaataactat
tgtatggaggagagattatga
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