Fusobacterium animalis 4_8: HMPREF0409_02342
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Entry
HMPREF0409_02342 CDS
T02680
Name
(GenBank) hypothetical protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
fus
Fusobacterium animalis 4_8
Pathway
fus03420
Nucleotide excision repair
fus03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HMPREF0409_02342
03430 Mismatch repair
HMPREF0409_02342
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fus03400
]
HMPREF0409_02342
Enzymes [BR:
fus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HMPREF0409_02342
DNA repair and recombination proteins [BR:
fus03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HMPREF0409_02342
MMR (mismatch excision repair)
Other MMR factors
HMPREF0409_02342
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
PDDEXK_1
AAA_19
UvrD_C
Cas_Cas4
UvrD_C_2
AAA_11
Viral_helicase1
AAA_30
DUF2800
CowN
Helicase_RecD
PhoH
DEAD
Motif
Other DBs
NCBI-ProteinID:
AGM23930
UniProt:
R9REA1
LinkDB
All DBs
Position
1548355..1551114
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AA seq
919 aa
AA seq
DB search
MSDLNKKQFEAVETVNGPVVIIAGPGTGKTKTLVERTVNILVNKKVEAKKIMITTFTNKA
AKELELRINERLEELNENIDISDIYLGTMHSIWARLIQENITYSNFFDNFELMSGDYEQH
FFIYSRLKEYKKLEDYQKFFDNLSYNENKYKSDWQKSAFLRNKINDLNENAIDIESVQTT
DIYINFIKSAYKLYEKQLFENDIVDFSYLQVEFLNMLLKNNEFLEKINNNFDYIMVDEYQ
DSNKIQEKILLSISKNKKNICVVGDEDQSIYRFRGASAENILNFSKYFNEDECKLIVLNE
NYRSVNHIVEFNNRWINAIDWHGNRFEKNIVSMRENDYMASNVFHISGSTLDENIRNTVT
FIKKLKQNNKIKNYNQIAILFSHFKDRSAKKLEDALKKENIEVYSPRTKVFFEMYEVKLT
FGIILACFKKYFPEEALDIYLLECLDLARLEIRKDNEFLVWIKEKIENISEYSFNSLNEI
FYELLNFSYYKNVLQEENPIEARANHNLAILTKIFKNFQKYVHSKKISIEDDFSIIKYFF
TKYLEILKQSRVDEIFSEEDYPNDCIPFLTIHQSKGLEFPVVIVFSLYSKPNVSGDLSRQ
TSIDRLINSNSKISEIDKEYFDFYRKFYVAFSRAKNLLVLSCYEKGVSENFKPFFYSVRG
VNSLQFDISQINLDEVSKKDERRILSYTTDIAIYRYCPMKYFLVREKEYSTFDKKVFNLG
IITHKAIEHINKSFLQKQEIFSDNYIEDLVKNIYKFQNIDLDNNVERIIDIVKKYIKDEK
DNFKYIKKVEASEFRVEDNYILYGQIDLILEDENEIKIIDFKTGKYNEIEFSSNYRQQLS
LYKLLLQKKYDKEIKTYLYYLEEDEPKKEILIDDENLKEDLENINKTVQDILDKKFPKIP
YNQNICGLCEFKNYCWGIQ
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatttgaataaaaaacaatttgaagcggttgaaactgtcaatggtcctgttgta
ataatagcaggacctggaacaggtaaaacaaaaactcttgttgaaagaactgtaaatatt
cttgtcaataaaaaagtagaagctaaaaaaattatgattactacttttacaaataaggct
gcaaaagaattggaacttaggataaatgaaaggttagaagaattaaatgaaaatatagat
ataagtgatatatacttaggaactatgcattctatatgggcaagacttatacaagaaaat
atcacttattctaatttttttgataactttgagcttatgagtggagattatgagcaacac
ttttttatttattcaagattaaaagaatacaaaaaattagaagattatcaaaagtttttt
gataatctttcttataatgaaaacaaatataaaagtgattggcaaaagagtgcatttctt
agaaataaaataaatgacttaaatgaaaatgcaatagatattgagagtgtacaaactact
gatatctatataaactttataaaatctgcttataaactttatgaaaaacaactttttgaa
aatgatatagttgatttttcttatctccaagtagagtttttaaatatgcttttaaaaaat
aatgaattcttagaaaaaataaataataattttgactatattatggttgatgaatatcaa
gacagtaataaaattcaagagaaaatattactttctatttcaaaaaataaaaaaaatatc
tgtgttgtaggagatgaagaccagtctatatatagatttagaggagcaagtgcagaaaat
attttaaatttttctaagtattttaatgaagatgaatgtaaacttatagttttaaatgaa
aattatcgttcagtaaatcatatagttgaatttaataacaggtggattaatgcaatagat
tggcatgggaatagatttgaaaaaaatatagtgtctatgagggaaaatgattatatggct
tctaatgtttttcatatttctggaagcaccttagatgaaaatattagaaatactgtaact
tttataaaaaagttaaaacaaaataataaaattaaaaactataatcaaattgctatctta
ttttcacattttaaagataggtctgcaaaaaaattggaagatgctttaaaaaaagaaaat
attgaagtttattctccaagaacaaaagttttctttgaaatgtatgaagtaaaattaact
tttggaataattttagcttgttttaaaaaatatttcccagaagaagcacttgatatatat
ttattagagtgtttagatttagcaaggttagaaattagaaaagataatgaatttttagtt
tggataaaagagaaaattgaaaatatttctgaatatagctttaactctttaaatgaaatt
ttttatgaattattaaatttttcttattataagaatgttttacaagaagaaaatcctatt
gaagcaagggctaatcataatttagccatacttactaaaatatttaaaaattttcaaaag
tatgtacattctaaaaaaataagtattgaagatgatttttctataattaaatattttttc
acaaaatatttagaaatcttaaaacagtcaagggttgatgagattttttctgaggaagat
tatcctaatgactgtattccatttttaactatacaccaatcaaaaggtttagaatttcca
gtagttattgtattctcattatattctaaacctaatgtaagtggagatttatcaagacag
acaagtatagatagacttatcaattcaaattctaaaatttctgaaatagataaagaatat
tttgatttttatagaaaattctatgtagcttttagcagagcaaaaaatttattagtttta
agttgctatgaaaaaggagtatctgaaaactttaaaccttttttctattcagttcgtgga
gtaaatagtttacaatttgatataagtcaaataaatttagatgaagttagtaaaaaagat
gaaagaagaattttatcatatacaactgatattgcaatttatagatattgtcctatgaaa
tattttttagtaagagagaaggaatattcaacttttgataaaaaggtatttaatttaggg
ataataactcacaaggcaatagaacatataaacaaatcatttttacaaaaacaagagatt
ttttctgataactatatagaagatttagtgaaaaatatctataagtttcaaaatatagat
ttggataacaatgttgagagaataatagatattgttaaaaaatatattaaagatgaaaaa
gataactttaaatatataaaaaaggttgaagcctctgaatttagagttgaagacaattat
attctatatgggcaaatagatttaattttagaagatgaaaatgaaataaaaattatagat
tttaaaactggaaaatataatgaaattgagttttcttctaattataggcaacaactatca
ctatataaattacttcttcaaaaaaaatatgataaggagataaaaacttatctatattat
ttggaagaggatgagcctaaaaaggaaattcttattgatgatgaaaatttaaaagaagat
ttagaaaatataaataaaacagttcaagatattttggataagaaatttcctaaaattcca
tataatcaaaatatctgtgggctttgtgaatttaaaaactattgttgggggatacaatga
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