Fulvivirga lutea: JR347_12475
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Entry
JR347_12475 CDS
T07076
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fuv
Fulvivirga lutea
Pathway
fuv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fuv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JR347_12475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fuv03019
]
JR347_12475
03009 Ribosome biogenesis [BR:
fuv03009
]
JR347_12475
Enzymes [BR:
fuv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JR347_12475
Messenger RNA biogenesis [BR:
fuv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JR347_12475
Ribosome biogenesis [BR:
fuv03009
]
Prokaryotic type
rRNA helicases
JR347_12475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
Imm8
Motif
Other DBs
NCBI-ProteinID:
QSE96419
UniProt:
A0A974WDW3
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All DBs
Position
2787683..2789350
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AA seq
555 aa
AA seq
DB search
MGLSAPLLKVLPELNIDQPTEIQQKAIPILLKEKERDFLGLAQTGTGKTAAFGLPLLDAV
DPDLKRTQALVLAPTRELGQQIAQQFQAFSKYMKGLRVQVVYGGASIVPQMKALKNTPHI
IIATPGRLLDLINRKSIDLSGIKHVVFDEADEMLNMGFREDIDHILSYTEGQKSTWLFSA
TMAPEIKSIVKKYMDNPSEVKIDAANVVNQNIDHKYFIAKAKDKVEIMKRIIELEPDMRG
IVFCRTKRETQQLAEELQKKGLPVDAIHGDLSQNQRDQVMKRFKNHSLEFLIATDVAARG
IDVNDLTHVIHYSMPDDLEYYTHRSGRTGRAGKKGISLALITSAEQRKVSFIQKKLNLNF
SQYVLPKAEHVENKRLMTWADTIISTEADHDMIAEHVNDVREKFNGLTKEDLIDKLITWE
LNELGLNKKSAFDENQTLEDTPTHSRHSATHDKYFINVGLIDGVNEKELVDFVSETVGIS
KSALGKINIDDKKSYFEIEKESSHLVGPAFSDLYVDNRKLRVNKEVGQKSQGRGGRKDRS
KRRISKHGKPSKRRR
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgggactttcagcacctttgcttaaagttcttcccgagttgaatatcgaccaaccgaca
gaaattcaacaaaaggcaattccaattttactaaaagaaaaagaaagagattttttaggt
ctggctcagacaggaacaggtaaaacagccgcttttggtttaccattgcttgatgcagtg
gatccagatttaaagagaacacaggcgcttgtattggcaccaacacgtgagttgggtcag
caaattgcgcagcagttccaggcattttccaagtatatgaaaggtctgcgtgttcaagtg
gtttatggtggtgcatctatagtgccccaaatgaaggcactaaaaaatactccacatata
attatagctacaccaggtaggctcttagacttaattaacagaaaatcgattgacctttct
ggcataaagcatgtggtttttgacgaagctgatgagatgctgaatatgggctttagagaa
gatatagatcatattttgtcttataccgaaggccagaaatcaacatggctattttcagct
actatggcaccggaaattaaatccattgtaaagaaatacatggataacccaagtgaggtg
aaaattgatgcggcaaatgtagttaaccagaatattgatcataaatactttattgctaaa
gccaaggataaggtagagattatgaaacgcattattgagcttgagcctgatatgcgtggg
atcgttttctgtagaaccaagcgcgaaacacaacaactggcagaagaattacagaaaaaa
ggattacctgtagatgctatccatggtgatttatcacagaatcagcgtgatcaggtgatg
aagcgatttaaaaaccattccttagagtttttgattgctactgacgtagctgccagagga
attgatgtaaatgatttaacgcatgtgatacattactctatgccggatgatctggagtat
tatacccatagaagtggaagaacaggtagggcaggtaaaaagggtatatcgctggcatta
attacaagtgcagagcagcgtaaagttagctttatacaaaagaaattgaatctgaatttt
agccagtatgtactgcctaaagctgaacatgtagaaaacaaacgtttaatgacatgggca
gatacaattatttctaccgaggccgatcacgacatgattgccgagcatgtgaatgatgtt
agggagaagttcaatgggcttactaaggaggatttaatcgacaagctaattacctgggaa
ttaaatgaactagggctgaataaaaagtctgcttttgacgaaaatcaaacactggaagat
actccaacgcactcaaggcatagcgctacacatgataaatactttatcaatgtagggtta
attgatggggtgaatgagaaagaattagttgattttgtttctgaaaccgtaggcataagc
aaatcggcactaggtaaaatcaacattgatgataaaaagtcttatttcgagattgagaaa
gaatcgtctcacttggtaggacctgcatttagtgatttatatgtggataatagaaagctt
agggtaaataaggaagttggacaaaaatctcaaggaagaggcggtagaaaagatagaagc
aaacgaaggatttccaaacacggcaaaccatcaaagaggaggagataa
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