Fulvivirga lutea: JR347_18325
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Entry
JR347_18325 CDS
T07076
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fuv
Fulvivirga lutea
Pathway
fuv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fuv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JR347_18325 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fuv03021
]
JR347_18325 (rpoC)
03400 DNA repair and recombination proteins [BR:
fuv03400
]
JR347_18325 (rpoC)
Enzymes [BR:
fuv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JR347_18325 (rpoC)
Transcription machinery [BR:
fuv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JR347_18325 (rpoC)
DNA repair and recombination proteins [BR:
fuv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JR347_18325 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Peptidase_M23
RnfC_N
MCM_C
Motif
Other DBs
NCBI-ProteinID:
QSE97508
UniProt:
A0A974WGY6
LinkDB
All DBs
Position
complement(4131750..4136060)
Genome browser
AA seq
1436 aa
AA seq
DB search
MSFRKNKKLDLDFSKVTISLASPESILESSHGEVTQPETINYRTYKPEMGGLFCERIFGP
VKDWECHCGKYKRIRYKGIICDRCGVEVTEKKVRRERMGHIELVVPVAHIWYFKSLPNKI
GYLLGLPTKKLDQIIYYERYVVIQPGIKEEDGLAMMDFLTEDEYLDILDKLPRENQLLDN
DDPNKFIAKMGAESLEMLLARIDLDTLSYDLRHQAATDTSQQRKAEALKRLKVVEAFREA
KTRIENRPEWMVIKMVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIDIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVRSDGNRALKSLSDMLKGKQGRFRQNLLGKR
VDYSGRSVIVVGPELKLHECGLPKDMAAELFKPFIIRKLIERGIVKTVKSAKKIVDRKDP
VVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDGDQM
AVHVPLGQEAILEASLLMLSSHNILNPANGAPIAVPSQDMVLGLYYVTKGRKSTKEEKVN
GEGMMFYSSEEVIIAMNEGILSKHAHIKVRTKVRNANGELETKVIETVAGRVLFNESVPE
EVGFVDELLTKKKLQKIISDVFKITGMARTAQFLDDIKELGFQMAYKGGLSMGLNDVAIP
PEKEALVEQAKQEVDAVWQNYLMGLITDNERYNQVIDIWTRINTQLTNTLMTRLEEDDQG
FNSIYMMMHSGARGSREQIRQLGGMRGLMAKPQKNLAGSVGAIIENPILSNFKEGLDVLE
YFISTHGARKGLADTALKTADAGYLTRRLVDVAQDLVITEEDCGTLRGLTVAALKDNEDV
VEPLSERILGRVSVHDIFDPITDELICASGEEITEEITNRIDETSIEEVEIRSVLTCETK
QGGCAKCYGRNLATGRMVQAGESVGVIAAQSIGEPGTQLTLRTFHVGGTASNIAVDANIK
AKFDGVIETEGIRTIKTTNKDGEKVEVVMGRTGEVKVVDPKKKQVLISNHVPYGAFIKVK
DGDKVEKGQELVYWDPYNAVILSEFDGTIEFESIIEGITYKEESDEQTGHREKVITDTKD
KTKNPAVIVNAKDESKGYNIPVGAHLAVDNGDKIKAGQILAKIPRSMGKSRDITGGLPRV
TELFEARNPSNPAVVSEIDGVVTYGGIKRGNREIFIESKDGIKKRYLVSLSKHILVQDND
FVKAGYPLSDGAITPADILAIKGPTAVQEYLVNEIQEVYRLQGVKINDKHIEAIVSQMMQ
KVMILDPGDTTFLTNESVDKFVFAEENDRVLDKKVVTDAGDSENFKPGQIISPRELRDEN
STLKRKDLKLVEVRDALSAVSKPVLQGITQASLKTESFLSAASFQETTKVLSEAAIRGKA
DGLLGLKENVIVGHLIPAGTGQRRFKDVLVTSPEEYDNLVAANEEANSEKELQADK
NT seq
4311 nt
NT seq
+upstream
nt +downstream
nt
atgtcattcagaaagaataaaaagctagacctcgatttttctaaggttaccatcagttta
gcatctcctgagtctattttagagagctcacacggagaagttactcagccggaaacaatc
aactacagaacatataagccggaaatgggtggattgttctgtgagcgtattttcggacct
gtgaaagactgggaatgtcattgtggaaaatacaagagaattagatataaaggtatcatc
tgcgaccgttgtggtgtagaggttactgaaaagaaagtaagaagagagagaatgggtcac
atcgaattagttgtgcctgtagctcacatttggtacttcaagtctcttcctaataaaatt
ggttacttattaggtttacctactaagaaactagaccaaatcatctattacgaaagatat
gtggttattcaaccaggtattaaagaagaagatggtttggcaatgatggacttcttgaca
gaagatgaatatttagatattctagataagcttccaagagaaaaccaattgttagataat
gatgatcctaacaagtttatagctaaaatgggagcagagtctcttgaaatgctattagct
cgtatcgatttagatacattatcttatgatctaagacatcaagctgctactgatacttca
cagcaaagaaaagcggaagctttaaagagattgaaagttgtagaagcattcagagaggct
aaaactagaatagaaaacagaccagagtggatggtgattaaaatggttccagtaattcca
ccggaattacgtccattagtgccattagatggtggtcgtttcgctacttctgatttaaat
gatctttacagaagggttattatcagaaataaccgtcttaagagacttatcgatatcaaa
gctccagaagtaattcttagaaatgagaaacgtatgcttcaagaggcggttgattcatta
ttcgataactctagaaaagtaaatgctgtaagatcagatggaaacagagcgttgaaatct
ttaagtgatatgcttaaaggtaagcaaggtagattccgtcagaacttattaggtaaaagg
gttgactactctggccgttcggttattgtagtaggacctgagctaaaactacacgagtgt
ggtcttcctaaagatatggcagctgaattattcaagccgtttatcattagaaagttaatc
gaaagaggaattgttaagactgttaagtctgcaaagaaaatagttgatagaaaggatcct
gttgtttgggatattttggaaaacgtattgaaaggacatcctgttcttctaaaccgtgct
ccaacccttcacagattaggtatccaggctttccaaccaaaactaattgaaggtaaagca
atccaattacatccgttagtatgtacagcatttaacgctgactttgacggtgaccagatg
gccgtacacgttcctcttggtcaggaagctatattggaggcatcattattaatgctttct
tctcacaacatccttaaccctgctaacggtgcaccaattgctgtaccttctcaggatatg
gttcttggtctttactacgtaactaaaggtagaaagagcacgaaagaagaaaaggtaaat
ggtgaaggcatgatgttctatagttcagaggaagtaatcattgctatgaatgaaggaatt
ctttctaagcatgcgcacatcaaagtaagaactaaggtgagaaatgccaatggagagcta
gaaactaaagttattgaaacagtagctggtagagttctatttaacgagtctgttcctgag
gaagtaggtttcgttgatgagttgttgactaagaagaaacttcagaagattatttctgat
gtattcaaaatcactggaatggctagaacagcacagttcttagatgatattaaagaactt
ggtttccaaatggcttacaaaggaggtctttcaatgggacttaacgatgtggctattcca
ccggaaaaagaagcattagttgagcaggctaaacaagaagttgatgctgtatggcaaaac
tacttaatgggtcttatcactgataacgagcgttataatcaggtaattgatatctggact
agaataaacacacaattgactaatactctaatgactcgtcttgaagaagatgaccaaggg
tttaactcaatttacatgatgatgcactcgggagcgagaggttcaagagagcaaatcaga
cagttaggtggtatgagaggattgatggcgaaaccgcagaagaaccttgcaggttcagtg
ggtgcgatcattgaaaacccgatcttatctaactttaaagaaggtctggatgtattagag
tactttatctcaactcacggtgctagaaaaggtcttgcagatacagctcttaaaacggct
gatgctggttacttaactagacgtcttgtagatgttgctcaggatttagtgatcactgag
gaagattgtggtactctaagaggcttaacagtggctgcattaaaagataatgaagatgtt
gttgaaccattatctgaaagaatacttggtagagtttctgtacacgatatcttcgatcca
attacagatgaattgatctgtgctagtggcgaagaaattactgaagaaatcactaaccga
atcgatgaaactagcatcgaagaagttgaaattagatcagtattaacgtgtgaaactaag
caaggtggttgtgctaaatgttacggacgtaacttggcaactggtagaatggttcaagct
ggtgagtctgtaggtgtaattgccgcacagtcaattggtgaaccaggtacacagcttaca
cttagaacattccacgttggtggtactgcttctaacattgctgtagatgccaacatcaaa
gctaaatttgatggtgtaatcgaaactgaaggaataagaacaatcaagactaccaataaa
gatggtgagaaagttgaggttgttatgggtagaacaggtgaagtaaaggttgttgatcca
aagaaaaaacaagtacttatctcaaatcacgttccttatggagctttcataaaagtgaaa
gatggtgataaagtggagaaaggacaggagcttgtttattgggatccttacaacgcggtt
attctatcagaatttgatggaactattgagtttgaatcaattattgaaggtattacttat
aaagaagaatctgatgagcaaactggtcacagagagaaagtaattaccgatactaaggat
aaaactaagaacccggcagttattgtaaacgccaaagacgagtctaaaggatataacatt
ccggtaggagctcacttagcagttgataacggagataaaattaaggcaggtcaaatacta
gccaaaattcctcgaagcatgggtaaatcaagagatattacagggggtcttccaagagta
actgagcttttcgaagctagaaacccttctaacccagctgtagtttctgaaattgatggt
gttgttacttacggtggaattaagagaggtaacagagaaatctttatcgagtctaaggat
ggtattaagaagagatatttagtatcactttctaagcacattcttgttcaggataatgac
ttcgtgaaagcaggttacccactttctgatggagctattactccagctgatatcttggcc
attaaaggaccaacagctgttcaggaatacttggtaaatgaaattcaggaggtatacaga
cttcaaggtgtgaaaattaatgataagcacattgaagcaattgttagccaaatgatgcag
aaagttatgattcttgatccgggagatacaacattcttaacgaatgagagtgtagataaa
tttgtatttgccgaagagaatgatagagtattagataagaaagttgtgactgacgcagga
gactctgaaaacttcaagccaggtcagatcatttctccaagagaacttagagatgagaac
tctacattaaagagaaaagatctaaaattagttgaagtgcgtgatgcattatcagcagtt
tcaaaacctgtattgcaaggtattactcaggcttcattgaaaacagaaagtttcttatca
gcagcttcattccaggaaacaactaaggtacttagtgaagcagctatcagaggaaaggct
gatggtcttcttggattgaaagaaaacgttattgttggacacttgattcctgcaggtact
ggacagcgaagatttaaagatgttctagttacatcacctgaagagtacgataacttggtt
gctgccaatgaggaagcaaacagtgagaaggaacttcaagcggataaataa
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