Fusobacterium varium: FV113G1_02010
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Entry
FV113G1_02010 CDS
T05280
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fva
Fusobacterium varium
Pathway
fva03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fva00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FV113G1_02010 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fva03021
]
FV113G1_02010 (rpoC)
03400 DNA repair and recombination proteins [BR:
fva03400
]
FV113G1_02010 (rpoC)
Enzymes [BR:
fva01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FV113G1_02010 (rpoC)
Transcription machinery [BR:
fva03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FV113G1_02010 (rpoC)
DNA repair and recombination proteins [BR:
fva03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FV113G1_02010 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Biotin_lipoyl_2
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
BBA49854
LinkDB
All DBs
Position
228423..232391
Genome browser
AA seq
1322 aa
AA seq
DB search
MGIRSFEKIRIRLASPEKIEEWSYGEITKPETINYRTLNPERDGLFCEKIFGPTKDWECA
CGKYKRMRYKGLVCEKCEVEVTRSKVRRERMGHISLAAPVSHIWYSKGTPNKMSLIIGLS
PKELESVLYFARYIVTEAGESNLKEGKILTEKEYKLYKQLYGNKFEALMGAEAILKLLEK
THLESLRDELEKELEDVTSSQKRKKVVKRLKIVRDFISSNNKPEWMILKNVPVIPADLRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKKLLEIKAPEIVVKNEKRMLQEAVDALIDNGR
RGKPVVAQNNRELKSLSDMLKGKQGRFRQNLLGKRVDYSARSVIVVGPSLKMNQCGIPKK
MALELYKPFIMRELVKRELASNIKTAKKLVEDADDKVWDVIEDVIQDHPVLLNRAPTLHR
LSIQAFEPVLIEGKAIRLHPLVCSAFNADFDGDQMAVHLMLSPEAIMEAKLLMLAPNNII
SPSNGEPIAVPSQDMVMGCFYMTKDRPGSKGEGKCFSNIDQALTAYNNGVLDTHAIIKVR
IKDEMVETTPGRIMFNEMLPDVDKQYHVTFGKSQLKKLIARLYDEHGFAETAELINKIKD
FGYHYGAMAGVSVGIEDLEIPEAKKEILAKADEEVAQIDADYKSGKIINEERYRKTIAVW
SEATEAVTKAMMDGLDQFNPVYMMANSGARGNISQMRQLAAMRGNMADTQGRIIEVPIKA
NFREGLTVLEFFMSSHGARKGLADTALRTADSGYLTRRLVDISHEVIVNAEDCGSEQGIE
VGELVSEGKVIEKLEERIRGRVLAEDLVHEGEVIATRNTMIGKELIEKINELGIRKVKIR
SPLTCSLEKGVCKKCYGMDLSNHREILLGEAVGVIAAQSIGEPGTQLTMRTFHTGGVATA
ATVISGIRAENAGKVVYRDIKILENDTTGEQTVVSQSAKIIIGNYDYEIPSGSILKVKEG
ERVEIGTTLVTFDPFHIPIIADQDGRIEYRELYVKENYDEKYDVTEYMAIKPVESGDINP
RVVIFDNDGNTKGSYTIPFGAYLMVREGEEVKKGQTIAKIIKEGAGTKDITGGLPRVQEL
FEARNPKGKAMLTDIEGKIEVTGKKKKGMRVIIVKSTIDPKDFREYLVPVGERLVVTDGM
LVKAGDKITEGAISPFDVLNIKGLVAAEQFILESVQQVYRDQGVGVNDKHIEIIVKQMFK
KVRIVDSGVSLFLEDEVVEKRIVDMENARLKELGKPLIKYEPIIQGITKAAVNTGSFISA
ASFQETTKVLSNAAIEGKIDYLEGLKENVIIGKKIPAGTGFNAYKNVKAVELEDKELELE
EE
NT seq
3969 nt
NT seq
+upstream
nt +downstream
nt
atgggaataagaagttttgagaaaataagaattagattagcatcccctgaaaagattgaa
gaatggtcatatggggaaattacaaaacctgaaactatcaactatagaactttaaatcca
gaaagagatggtctgttttgtgaaaaaatatttggaccaactaaagattgggaatgtgct
tgtggtaagtacaaaagaatgagatataaaggtcttgtttgtgaaaagtgtgaggtagaa
gtaactagatctaaagtaagaagagagagaatgggacacatatctttagctgctccagta
tctcatatttggtattctaagggaactccaaataaaatgtcacttatcattggattatct
ccaaaagagttagaatctgtattatattttgcaagatacatagtaacagaagctggtgaa
agtaacttaaaagaaggaaaaattcttactgaaaaagaatataaattatataaacaatta
tacggaaacaaatttgaagccctaatgggagcagaagcaatattaaagcttcttgaaaag
actcatcttgaatcattgagggatgaattagaaaaagaattagaagatgtaacttcttca
caaaaaagaaaaaaagtagtaaaaagacttaaaatagttagagattttatttcttctaat
aacaagcctgaatggatgatacttaaaaatgttcctgtgattccagctgatttaagacca
atggtacaattagatggaggaagatttgctacttctgacttaaatgatctttataggaga
gttatcaatagaaataacaggcttaaaaaacttttagaaataaaagctcctgaaatagtt
gtaaaaaatgaaaaaagaatgcttcaagaggctgtagatgctcttattgacaatggaaga
agaggaaaaccagttgttgctcaaaacaacagagaacttaaatctctatctgacatgtta
aaaggtaaacaaggtagatttagacaaaacctacttggaaaaagggttgactattcagca
aggtcggttattgttgttggaccatcattgaaaatgaatcaatgcggaattcctaagaaa
atggctcttgaactttacaagccttttattatgagagaacttgtaaaaagagagcttgca
tcaaatattaaaacagctaaaaaattagttgaagatgcagatgataaggtatgggatgta
attgaagacgtaattcaagatcatccagtattattgaacagagctccaactcttcataga
ttgtctattcaagcttttgaacctgtattgattgaaggaaaagctataagacttcaccca
ttagtatgttctgcatttaatgctgactttgatggggaccaaatggctgttcacttaatg
ttgtcaccagaagctataatggaagcaaaacttttgatgttggctccaaataatattatt
tctccatctaatggagaaccaatagcagtaccttctcaagatatggttatgggatgtttc
tatatgactaaagacagaccaggatcaaaaggtgaaggaaagtgtttttcaaatatagat
caagcacttacagcttataataatggagtgttagatactcatgctataatcaaagtgaga
attaaagatgaaatggtagaaactactcctggaagaattatgtttaacgaaatgcttcct
gatgtagataaacaatatcatgtaacatttggtaaatcacaactgaagaaacttattgct
agattatatgatgaacatggatttgcagaaactgctgaacttatcaataaaattaaagac
tttggatatcactatggtgcaatggcaggtgtttcagtagggatagaagacttggaaatt
ccagaagctaaaaaagaaatacttgcaaaagcagatgaagaggtagctcaaatagatgct
gattataagtcagggaaaattatcaatgaagaaagatatagaaaaactatcgctgtttgg
tctgaagctactgaagctgtaactaaagcaatgatggatggacttgatcagttcaaccca
gtttatatgatggcaaattcaggagccagaggtaacatctctcagatgagacagctagct
gctatgaggggtaacatggccgatacacaaggaagaattattgaagttcctattaaagca
aatttccgtgaaggattgacagtattagaattctttatgtcatcacatggagcaagaaaa
ggactggcagatacagctctgagaactgccgattcaggatatctaacaagaagacttgtt
gatatttcacatgaagttatagtaaatgctgaagattgtggaagtgaacaaggaatagaa
gttggagaacttgtatcagaaggtaaagttattgaaaaactagaagaaagaattagagga
agagttcttgctgaagatttagtacatgaaggggaagtaattgctactagaaatactatg
attggaaaagaacttatagaaaaaataaatgaactaggtatcagaaaagtgaaaatcaga
tcaccattaacttgttcacttgaaaagggagtatgtaaaaaatgttatggtatggattta
tctaaccatagagaaatacttcttggagaagcagttggagttattgcagcccaatcaatc
ggagaaccaggtacacagcttacaatgagaacgttccatacaggaggagttgcaacagca
gctactgtaataagtggaattagagccgagaatgctggtaaagttgtatatagagatata
aaaattcttgaaaatgacactactggagagcaaactgtggtaagtcaatctgctaagata
attattggaaactatgactatgagattccatctggatcaatacttaaagtaaaagagggt
gaaagagtggaaataggtactactctagtaacatttgatccattccatatccctattata
gctgaccaagatggtagaatagaatacagagaactttatgtaaaagaaaattatgatgaa
aagtatgatgttactgagtatatggcaattaagccagttgaatcaggagatatcaaccca
agagttgtgatatttgataatgatggaaatacaaaaggaagctatactatcccatttgga
gcttacttaatggtaagagagggagaagaagttaaaaaaggtcagacaatagctaaaatc
atcaaagagggtgctggaactaaagatatcactggaggtcttccaagagtacaagagcta
tttgaggcaagaaatcctaaagggaaagcaatgcttactgacatagaaggtaaaatagaa
gtaactggtaagaaaaagaaaggtatgagagtcattattgtaaaatctacaattgatcca
aaagacttcagagaatacttggtaccagtaggggaacgtctggtagtaactgatggtatg
cttgttaaggctggagataaaataacagaaggagctatttctccatttgacgtattgaat
attaaaggacttgtagctgctgaacaatttatccttgagtcagtacagcaagtatataga
gatcaaggagttggagttaacgacaaacatattgagatcatagttaaacagatgtttaag
aaagtaagaattgttgattctggagtatctttattcctagaagatgaagttgttgaaaag
agaattgtagatatggaaaatgcaagattaaaagaattaggaaaacctttaatcaagtat
gaaccaatcattcaaggtattactaaagctgctgttaatacaggaagttttatatcagct
gcctcattccaagaaactacaaaagttctttctaatgcagcaatagaaggtaaaattgac
tatttagaaggactaaaagaaaatgtaattataggtaaaaagattccagcaggaactgga
tttaatgcttataaaaatgtaaaagcagttgaacttgaagacaaagaattagaactagaa
gaagaataa
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integrated database retrieval system
