Fusobacterium varium: FV113G1_05350
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Entry
FV113G1_05350 CDS
T05280
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
fva
Fusobacterium varium
Pathway
fva03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fva00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FV113G1_05350 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fva03021
]
FV113G1_05350 (rho)
03019 Messenger RNA biogenesis [BR:
fva03019
]
FV113G1_05350 (rho)
Transcription machinery [BR:
fva03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
FV113G1_05350 (rho)
Messenger RNA biogenesis [BR:
fva03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FV113G1_05350 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
SAP_new25
OB_RNB
AAA_25
AAA_19
Spore_III_AA
AAA
PCDH15_12th
Motif
Other DBs
NCBI-ProteinID:
BBA50188
LinkDB
All DBs
Position
609174..610430
Genome browser
AA seq
418 aa
AA seq
DB search
MDKLDRFLLKELQEIAKQLGIEYKSGIKKSELKELIEKDIEEKEGLDIAWGSLEVLPDGY
GFLRNTSVEKDVYVSASQVRKFKLRTEDIVVGEVREPSGDEKNYALRRVLLVNSGTLEAA
ESRVPFEDLVPAYPTERFILETDRKNVSGRIIDLIAPIGKGQRALIIAPPKAGKTMLISS
IANSMIEQNKETEVWILLIDERPEEVTDIKESVIGAQVFASTFDEDPRNHIKVTEMILER
AKRKVENGENIVILMDSLTRLARAYNIVIPSSGKLISGGIDPTALYYPKNFFGTARNIRG
GGSLTIIATVLVDTGSKMDDIIYEEFKSTGNCDIHLDRNLAELRIFPAIDIQRSGTRKEE
LLIPKSELESIWSIRRYLSQYDRATASRKLIDTILNTESNKKLLEFYEKGERKTKNEI
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atggataagttggatagatttcttttaaaagaacttcaagagatagcgaagcaattgggg
atagaatataaaagtggaataaaaaaatctgaactgaaagaattgatagaaaaagatatt
gaagaaaaagaaggattagatattgcttggggaagcctagaagtattacctgatggttat
ggatttttaagaaatacaagtgtagaaaaagatgtctatgtatcagcctcacaagtaaga
aaatttaagctaagaactgaagatatagtagttggagaagtaagagaaccttcaggagat
gaaaaaaactatgctcttagaagagttttattagtaaatagcggaacactggaggctgct
gaatcaagagtaccttttgaagaccttgtaccagcttatccaactgagagatttattctg
gagactgacagaaaaaatgtttcaggaaggataatagatcttatagcgccaataggaaaa
ggacaaagagctttaataatagctccaccaaaagctggaaaaactatgctcataagcagc
atagcaaactcaatgatagaacaaaataaagaaacagaagtatggatacttttaatagat
gaaagacctgaagaagttacagatataaaagaatcagtaataggagctcaagtatttgct
tctacatttgatgaggatccaagaaatcatataaaagttacagaaatgatactggaaaga
gcaaaaagaaaagttgaaaatggagaaaatatagttatacttatggattctcttacaaga
cttgcaagagcatataatatagttattccatcaagtgggaaactaatatctggaggaatt
gatccaacagctttatactatcccaaaaatttctttggaacagctagaaatataagaggc
ggaggaagtttaactattatagccacagttcttgtagatacaggaagtaaaatggatgat
ataatatatgaagaatttaaatcaacagggaactgtgatatacatttagatagaaactta
gctgaattgagaatatttccagctatagatatacaacgttcaggaactagaaaagaggaa
cttttaatacctaaaagtgaattagaaagtatttggagcataagaagatatttatctcaa
tatgatagagctacagcttcaagaaaacttatagatactatacttaatacagaaagcaat
aaaaagcttttagaattttatgaaaaaggggagaggaagactaaaaatgaaatctaa
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