Fusobacterium varium: FV113G1_08910
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Entry
FV113G1_08910 CDS
T05280
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
fva
Fusobacterium varium
Pathway
fva03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fva00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FV113G1_08910 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fva03019
]
FV113G1_08910 (pnp)
03016 Transfer RNA biogenesis [BR:
fva03016
]
FV113G1_08910 (pnp)
Enzymes [BR:
fva01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
FV113G1_08910 (pnp)
Messenger RNA biogenesis [BR:
fva03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FV113G1_08910 (pnp)
Transfer RNA biogenesis [BR:
fva03016
]
Prokaryotic type
tRNA degradation factors
FV113G1_08910 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
KH_2
S1_RRP5
OB_RRP5_4th
SH3_AEBP2_C
SAC3
Motif
Other DBs
NCBI-ProteinID:
BBA50544
LinkDB
All DBs
Position
1007845..1009944
Genome browser
AA seq
699 aa
AA seq
DB search
MFDEKKVELELAGRTLSFSTGKIARQSCGAVMVQYGETVLLSTVNRSKEPRKGADFFPLT
VDYIEKFYAAGKFPGGFNKREGRPSTNATLTARLIDRPIRPMFPEGFNHDVHIVNTVFSY
DEKNTPDYLGIIGSSMALMLSDLPFLGPVAGVVVGYKNGEFILNPTPEELETSDLELSVA
GSKDAVNMVEAGAKELDEETMLAAIMFAHENIKKICAFQEEFAKIAGKEKIDFVKKEVLP
LVKDFIDEKGMERLKDAVLTLGKKAREEAVDSLEEELMEAFILENYEGVEEEDIPEEVIG
EFKGYYHDLMKKLVREAILYHKHRVDGRKTTEIRPLFAETGVLPIPHGSAMFTRGETQAV
VVTTLGTKEDEQLVDDLEKEYFKKFYLHYNFPPYSVGETGRMGSPGRRELGHGSLAERAL
SYVIPSEEEFPYTIRVVSEITESNGSSSQASICGGSLSLMAAGVPIKEHVAGIAMGLIKE
GEEFTVLTDIMGLEDHLGDMDFKVAGTKKGITALQMDIKITGITEEIMRIALKQALDARN
EILIVMNNAISKPADLRPNVPRIHQMKIATDKIAALIGPGGKNIKGIIEKTGATIDISDD
GNVSIFSKDEEVLKETITLVNAFVKDVEVGEIYNGRVVNIAKFGAFMEILPGKEGLLHVS
EISNERVANVEDVLKVGDRFDVKVISTENGKISLSKKKI
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgtttgatgagaaaaaagttgaactagaactagctggaagaacgctaagtttttcaact
ggaaaaatagcaagacaatcttgcggagctgtaatggttcaatatggggagactgtactg
ttaagtactgtaaaccgtagtaaagagccaagaaaaggggctgattttttccctttaaca
gttgattatattgaaaaattttatgctgctggaaaatttccgggaggattcaataaaaga
gaaggaagaccttcaacaaatgcaacattgacagcaagacttatagacagacctataaga
ccaatgtttccagaaggatttaatcatgatgtacatattgtaaatactgtattttcatat
gatgaaaaaaatacacctgattatttaggaataataggatcttcaatggcacttatgctt
tctgatcttccattcctaggaccagtagcaggggttgtagtaggatataaaaatggagaa
tttattttaaatccaactccagaagagttagaaacaagtgatcttgaattatcagtagca
ggatcaaaagatgctgtaaatatggttgaagcaggagctaaagaattagatgaagaaact
atgcttgctgcaataatgtttgctcatgagaatattaaaaaaatctgtgcttttcaagag
gaatttgcaaaaatagctggaaaagaaaaaatagattttgttaaaaaagaagttttacca
ttggtaaaagactttatagatgaaaaaggaatggaaagattaaaagatgctgttcttact
ttaggtaaaaaagcaagagaagaagcagttgattcattagaagaagaattaatggaagca
tttattcttgaaaattatgaaggtgttgaagaagaggatattccagaagaagtaattgga
gaattcaaaggatattatcatgatcttatgaagaaactggttagagaagctattctttat
cacaagcatagagtagatggaagaaaaactactgaaataagaccattatttgctgaaaca
ggagttcttcctattcctcacggatcagcaatgtttacaagaggagaaactcaagctgtt
gttgtaacaactttaggaactaaagaagatgagcaattagttgatgacttagaaaaagaa
tactttaaaaaattctatcttcattataacttccctccatattcagtaggagaaacagga
agaatgggatcacctggtagaagagaattaggacatggatctcttgctgaaagagctctt
agctatgtaattccatcagaagaagaatttccatatactataagagtagtatctgaaata
acagaatcaaatggatcttcttctcaagcatctatatgtggaggatcgctttcacttatg
gctgcaggagtacctattaaagagcatgtagctggaatagctatggggcttattaaagaa
ggagaagaatttactgtattgacagatattatgggacttgaggatcacttgggagatatg
gactttaaagtggcaggaactaaaaaaggtataactgcacttcaaatggatattaagata
acaggaataacagaagaaataatgagaatagctttaaagcaagcattagatgctagaaat
gagatattaattgttatgaataatgctatttctaaaccagcagatcttagacctaatgta
cctagaatacatcaaatgaaaatagctacagataaaatagctgcattaattggacctgga
ggaaaaaatatcaaaggaattatagaaaaaacaggagcaactattgacatcagtgatgat
ggtaacgtttctattttctctaaagatgaagaagtgctaaaagaaacaatcactcttgta
aacgcatttgtaaaagatgtagaggtaggagaaatatataatggaagagtagtaaatatt
gctaaatttggagcgtttatggaaatacttcctggaaaagaaggacttcttcatgtttct
gaaatttcaaatgaaagagtggcaaatgtagaagatgtattaaaagttggagatagattt
gatgtaaaagttatttcaactgaaaatggaaaaattagtttaagtaaaaagaaaatttag
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