Fusobacterium varium: FV113G1_12570
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Entry
FV113G1_12570 CDS
T05280
Symbol
polC
Name
(GenBank) DNA polymerase III subunit alpha
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
fva
Fusobacterium varium
Pathway
fva03030
DNA replication
fva03430
Mismatch repair
fva03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fva00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FV113G1_12570 (polC)
03430 Mismatch repair
FV113G1_12570 (polC)
03440 Homologous recombination
FV113G1_12570 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fva03032
]
FV113G1_12570 (polC)
03400 DNA repair and recombination proteins [BR:
fva03400
]
FV113G1_12570 (polC)
Enzymes [BR:
fva01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FV113G1_12570 (polC)
DNA replication proteins [BR:
fva03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FV113G1_12570 (polC)
DNA repair and recombination proteins [BR:
fva03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FV113G1_12570 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
DNA_pol3_finger
PHP
HHH_6
RNase_H_2
Sarcoglycan_1
Motif
Other DBs
NCBI-ProteinID:
BBA50908
LinkDB
All DBs
Position
1451983..1456323
Genome browser
AA seq
1446 aa
AA seq
DB search
MNRNEIRIKPQDSIFRQMGINSVDIKEIVFSERNKKMKFMCSVPCVKDLCELDIIYENIK
KNFGKELEVDFRVEYTEKEMMKEELIVIVERAIIRLKARNAISKSFLYFYRIKIEEEAVN
IELNEKTAIEILISSGIDDKLEEILENYGIYNFKVKFILGDFSKELTEVEKQKQKEIITL
SAKIDSDNSKAAASKPQKSNEVFVKQGFSKQGYTSNKTKEIKGNSISIEEFGELYEDEIC
IVEGEIFSIESRDIKNDKILMTIRITDERSSLTTKVFLDKNKKLEVSVGDFIKVSGKKQV
DKFSDNEEIIMINSINKLDKVKVQKIDNAPEKMVELHTHSKMSEMVGVEDISDLIKQAIE
YGHKAMAITDYAVVHSFPFAYKAAKGKDFKAILGCEMYMVNDTAEMVRSSKNIPIEEESF
VVFDLETMGLNSHEHEIIEIGAVKLQGTRIIERYSQLVNPKKSIPKKIQELTNISQDMVD
NMPTIDEVLPKFMEFVGDSTMVAHNAPFDMGFIRRDVKKIMGYDYKPAVIDTLQMARDLY
PDLKAYGLKNLNKVLGLSLDNHHRAVDDSQATANMFIIFIEKYIEMGITNLSEITGALPI
NVKKQDTSNIIVLVKNLQGLHNMYRLVSEAHVDYYGNKKPRVMKSHIEKYREGLIIGSSL
SSHFMNDGELSNYYMRYDYEKIEKNIEFYDYIELLPKGAYSELYEDDGTGTISSFSMIED
MNKYFYNLAKERGKLVTASSNVHYINETDSKIRSILLYGSGSVYRENQYKTDNKFYFRTT
EELVNEFDYMGEDIAKEIVISGTNTIADMIEVIKPVPDGFYPPKIDNAENIVKEMTYEKA
YRIYGNPLPEIVKARLERELGAIIGNGFSVLYLSAQKLVKKSLDNGYLVGSRGSVGSSLV
AYMMDITEVNALYPHYICTNPECKNSEFIEREGVGIDLPEKMCPKCGQVYKRDGYSIPFE
VFMGFNGEKVPDIDLNFSGEYQSEIHRYCEQLFGKENVFKAGTISTLAEKNAEGYVRKYF
EEHEMKGNRAEIIRLAKKCEGAKKTTGQHPGGMVVVPRDHSIYEFCPVQKPANDEKNDSI
TTHFDYHVMDEQLVKLDILGHDDPTTIKMLQEYTGVDIYTIPIADPETLKIFSGTESLGI
TPDDINSVVGTFGVPEFGTPFVRQMLIDTMPKTFAELVRISGLSHGTDVWLNNAQEFIRQ
KKATLSQVITVRDDIMNYLIDQGLEKGTAFKIMEFVRKGKPSKDPEGWEKFSNEMKEHDV
AEWYIESCRRIKYMFPKGHAVAYVMMAMRIAYFKVHYPLAFYAAYLSRKAEDFDYEIMSD
PKTAKEHLAVLSKEPKLDVKKKAEMAICEIIVEMYARGYEFLPIDVYTSAGFKFTIEDGK
IRIPLIALNGLGGAVIENLIKERETSKFLSYEDLKRRTKISQTIIEKLKSINAVDSLSET
NQISLF
NT seq
4341 nt
NT seq
+upstream
nt +downstream
nt
atgaatagaaatgagatcagaataaaacctcaggacagtattttcagacagatgggaata
aactctgtagacattaaagagatagttttcagtgaaagaaataagaaaatgaagtttatg
tgttccgttccatgtgtaaaagacctctgtgaacttgatataatctatgaaaatataaaa
aagaattttggaaaagagttggaagtagattttagagtagagtatacagagaaagaaatg
atgaaggaagaacttatagtaatagtagaaagagccataatcagacttaaggcaagaaat
gctatttctaaatcatttctttatttttatagaataaagatagaagaagaagctgtaaat
attgaacttaatgaaaaaacagctatagaaattcttataagttctggaatagatgataaa
cttgaagaaatactggaaaattatggaatatataattttaaagttaaatttatacttgga
gatttttccaaggaattaacagaagtagaaaaacaaaaacagaaagaaataataacttta
tcagctaaaatagactctgataattcaaaagcagcagcgtctaaacctcaaaaatcaaat
gaggtctttgtaaaacaaggattttcaaaacagggatatacaagtaataaaacaaaagaa
ataaaaggaaactctatttcaatagaggaatttggagaactctatgaagatgaaatttgt
atagttgaaggagaaatattttctattgagagcagagatatcaaaaatgataaaatttta
atgacaataagaataaccgatgaaagaagttctctgacaacaaaggtatttcttgataaa
aataaaaaattagaagtatctgttggagattttattaaagtaagcggaaaaaaacaagtt
gataagttttctgataatgaagaaataataatgataaattctattaataaacttgataag
gtaaaagttcaaaaaattgataatgctccagaaaaaatggtagagcttcatacacatagt
aaaatgagtgagatggttggagtagaagatatttcagaccttataaaacaggcaatagag
tatggacataaagcaatggctataactgattatgcagtagtacattcttttccatttgct
tataaggcagctaaaggaaaagattttaaagctattcttggatgtgaaatgtatatggta
aatgatactgctgaaatggtaagaagcagtaaaaatatacctattgaggaagaaagtttt
gtagtatttgacttagagactatgggacttaattcacatgaacatgaaataatagaaata
ggagctgtaaaacttcagggaacaagaataatagagagatattctcaattggttaaccct
aaaaaatctattcctaaaaagatacaggagcttacaaatatatctcaagatatggttgat
aatatgcctacaatagatgaagtccttcctaagtttatggaatttgtaggtgactctaca
atggtagcacataatgctccatttgatatgggatttataagaagagatgtcaaaaaaatt
atgggatacgattataaacctgcagtaatagatacgttacaaatggcaagagatttatat
cctgatcttaaagcatatggattgaaaaacttgaataaagtattaggattatcattagat
aaccaccatagagctgtagacgactcacaagcaacggctaatatgttcattatatttatt
gaaaaatatatagaaatgggaataactaatcttagtgaaataacaggtgctctcccaata
aatgtaaaaaaacaagatacatccaatataatagtattggtgaaaaatcttcagggactt
cataatatgtacagattagtatcagaagctcatgttgattattatggaaataagaaacca
agagtcatgaaatcacatatagaaaagtatagagaaggattgattattggaagttctctt
tcttcacattttatgaatgatggagaattatctaattattatatgagatatgattatgaa
aaaatagaaaaaaatatagaattttatgattatatagagcttcttccaaaaggagcatat
tcagagttatatgaagatgatggaactggaactatatcatctttttcaatgattgaagat
atgaataaatatttttataatttagctaaagagagaggaaaattagtaacagcaagttct
aatgtacattatataaatgaaactgacagtaaaataagaagcattcttctttatggaagt
ggaagtgtttatagagagaatcaatataagacagataataaattttattttagaaccaca
gaagaacttgtaaatgaattcgactatatgggtgaagatattgcaaaggagatagttata
tcaggaacaaatactatagctgatatgatagaagttataaaaccagtacctgatggattt
tatcctcctaaaatagataatgctgaaaatatagtaaaagagatgacatatgaaaaagca
tacagaatatatggaaatcctctcccagaaatagttaaagcaagattagaaagagaactt
ggagctattataggtaatggcttttcggtactttatctttcagctcaaaaacttgttaaa
aaatcactggataatggatatctagttggttccagaggatcagtaggttcttctctagtt
gcttatatgatggatattacagaagttaatgctctttatccacactatatatgtacaaat
ccagaatgtaaaaattctgaatttatagaaagagaaggagtaggaattgaccttccagaa
aagatgtgtccaaagtgtggacaggtatataaaagagatggatattcaataccatttgaa
gtatttatgggatttaatggagaaaaagtaccagatatcgaccttaacttctcaggagaa
tatcaatcagagatacatagatattgtgaacagcttttcggtaaagaaaatgtatttaaa
gcaggaactatatctacactggcagaaaaaaatgctgaaggttatgtaagaaaatatttt
gaagaacatgaaatgaaaggaaatagagctgagataataagacttgcaaaaaaatgtgaa
ggagctaagaaaactacagggcaacaccctgggggaatggttgtagttcctagagatcac
tctatatatgaattttgtcctgtacagaaacctgcaaatgatgaaaaaaatgattctatt
acaacacactttgattatcatgtaatggatgaacagttagtaaaactagatatacttgga
catgatgatccaactaccataaagatgcttcaggaatatacaggagtagatatttatacc
attcctattgctgatccagaaacattaaaaatattttctggaactgaatcattaggaatt
actcctgatgatataaattcagtagtcggaacttttggagtaccagaatttggaacacca
tttgtaaggcaaatgcttatagatactatgccaaaaacttttgctgagcttgtaagaata
tcaggattatcacatggtactgatgtttggctgaataatgctcaagagtttataagacag
aaaaaagcaactctatctcaagtaataacagtgcgtgatgacataatgaactatcttatt
gatcagggacttgaaaaaggaacagcatttaaaataatggagtttgtaagaaagggaaaa
ccttcaaaagatccagaaggatgggaaaaattttcaaatgaaatgaaggaacatgatgtt
gcagaatggtatatagagtcatgcagaagaataaaatatatgttccctaaagggcatgca
gttgcttatgttatgatggcaatgagaatagcttatttcaaagtccattatcctctggct
ttttacgcagcatatttgtcaagaaaggcagaagattttgattatgagataatgagtgac
cccaaaacggcaaaagagcatttagcagtattgagtaaagaacctaaactggatgtaaag
aaaaaggccgaaatggcaatatgtgaaatcatagtggaaatgtatgccagaggatatgaa
tttcttccaatagatgtatatacatcagcagggtttaaatttacaatagaggatggtaag
ataagaatacctcttatagcccttaatggattgggtggagcagtaatagaaaatttaata
aaagaaagagaaacaagtaaatttttatcatatgaagatcttaaaagaagaacaaagata
tcacaaacaataattgaaaaacttaagtctataaatgcagtagattcattgagcgaaaca
aatcagatatcgttgttttag
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integrated database retrieval system
