Fusobacterium varium: FV113G1_21890
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Entry
FV113G1_21890 CDS
T05280
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fva
Fusobacterium varium
Pathway
fva03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fva00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FV113G1_21890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fva03019
]
FV113G1_21890
03009 Ribosome biogenesis [BR:
fva03009
]
FV113G1_21890
Enzymes [BR:
fva01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FV113G1_21890
Messenger RNA biogenesis [BR:
fva03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FV113G1_21890
Ribosome biogenesis [BR:
fva03009
]
Prokaryotic type
rRNA helicases
FV113G1_21890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
DeaD_dimer
AAA_22
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
BBA51839
LinkDB
All DBs
Position
complement(2455888..2457471)
Genome browser
AA seq
527 aa
AA seq
DB search
MEKLEEFKKLGLGEKTIKALSKKGYEKPTPIQALTIPALLDGEKDIIGQAQTGTGKTAAF
SLPILERFEPGKVVQAIVLAPTRELAIQVAEEMNSLANGKKIRITPVYGGQSIEFQIRQL
KKGTDIIVGTPGRVMDLMDRKLIKLDNLKYFILDEADEMLNMGFLEDVEKILESTNDDKR
MLFFSATMPNEILKVAKKHMRDYEVLAVKTRELTTDLTDQIYFEVHERDKFEALCRIIDL
TKDFYGIVFCRTKNDVNDVVGKLNDRGYDAEGLHGDISQNYREVTLKRFKAKKINVLVAT
DVAARGIDVNDLSHVINYSIPQEAESYVHRIGRTGRAGKEGTAITFITPQEYRRLLQIQK
IVKTEIRKERVPGVKDVIQAKKFRLIEELNHILAENNFDNFKDLSRELLNGEDAVDIVAA
LIKHSYEDVLDESNYNEINNSAPLEKTGKVRLFVALGRKNEMTPKKLVEMVTSKTKVDER
KLKNVEVYENFSFLSVPFQEAEEIIEVFKQDKKGRKPLIEKAKEKKQ
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaattagaagaattcaaaaaattaggattgggagagaaaacaataaaggctctt
tcaaaaaagggatatgaaaaaccaacacctatacaagctttaactataccagcattatta
gatggagaaaaggatataatagggcaggcacaaacaggaactggaaaaacagcagccttt
tcattgccaatattagaaagatttgaacctggaaaagtagtacaagctattgttttagct
cctactagagagcttgctatccaagttgctgaagaaatgaacagtcttgcaaatggtaaa
aaaataagaataactcctgtatatggaggtcagtcaatagaatttcaaatcagacaatta
aaaaagggaactgatataattgttggaactcctggaagagtaatggatttgatggataga
aaacttataaaattagataaccttaaatatttcatattagatgaggctgatgaaatgctc
aatatgggatttttagaagatgtagaaaaaattcttgaatctacaaatgatgataaaaga
atgcttttcttctctgctacaatgccaaatgaaatattgaaagttgctaaaaaacatatg
agagattatgaagttttagctgtaaaaactagagagcttacaactgatttaactgatcaa
atttattttgaagtacatgaaagagataagtttgaagctttgtgcagaataattgattta
actaaagatttttatggaatagttttctgcagaactaaaaatgatgtaaatgatgtggtt
ggaaagttaaacgatagaggatatgatgctgaagggcttcatggagatatcagccaaaat
tatagagaagtaactttaaagagatttaaagctaaaaaaataaatgtattggtagcaaca
gacgttgctgcaagaggaatagatgtaaatgacctttcacatgtaatcaattattctatc
ccacaagaagctgagagttatgtccatagaataggaagaactggaagagctggaaaagaa
ggaactgctataacatttattactccacaagagtatagaagacttcttcaaatacaaaag
attgtaaaaactgaaattagaaaagaaagagttccaggtgtaaaagatgtaattcaagct
aaaaaattcaggctaatagaagaattaaatcatatattagctgaaaataattttgataat
ttcaaagatctttcaagagaacttttaaatggtgaagatgcagtagatatagttgcagca
ctaattaaacattcatatgaagatgtacttgatgaaagtaattacaatgaaataaataac
agtgctccattggaaaaaactggaaaagtaagattatttgttgctttaggaagaaaaaat
gagatgactcctaagaaattagttgagatggtaactagcaaaactaaagttgatgagaga
aaattaaaaaatgttgaagtatatgaaaatttctcattcctttctgttcctttccaagaa
gcagaagaaattattgaagtattcaaacaagataaaaaaggaagaaaacctttaatagaa
aaagctaaagaaaagaaacaataa
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