Fusobacterium varium: FV113G1_25250
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Entry
FV113G1_25250 CDS
T05280
Name
(GenBank) exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
fva
Fusobacterium varium
Pathway
fva03410
Base excision repair
fva03430
Mismatch repair
fva03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fva00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
FV113G1_25250
03430 Mismatch repair
FV113G1_25250
03440 Homologous recombination
FV113G1_25250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fva03400
]
FV113G1_25250
DNA repair and recombination proteins [BR:
fva03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
FV113G1_25250
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
FV113G1_25250
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FV113G1_25250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Toprim
Hom_end
bHLH_INO4
MutS_IV
Motif
Other DBs
NCBI-ProteinID:
BBA52175
LinkDB
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Position
2803427..2805145
Genome browser
AA seq
572 aa
AA seq
DB search
MHWEYSSLPQTLIDTKAAQWKKNRLLTTLLLNRGFEDGKKADEFISPKISDFRDPFKFEK
MEKVVDKILEKREKKEKVFIYGDYDVDGITAAVFLVLVFRNIGIEVDYYIPNRMEEGYGL
DKKTIDFINTENGKLVITVDTGVNSIEDVKYAESLGIDVIVTDHHKSIKEEEDDHLLLLN
PKLSDTYEFKYLSGAGVALKVAQGVYQKLKIDIKDLYQYMDIVMIGTVADVVPMTDENRI
IIKQGLRALKKTKVKGLMYLLKYLKFQNKTINTTDVSYFISPLINSLGRIGVSKMGADFF
LKEDDFEIYNIIEEMKKSNKKRRELEKNIYDEANQEIAKIGIKNLKCIFLSSEKWHPGVI
GVVSSRLSVKYNIPVTLVAFKDEIGKASCRSIKGISVFNIFQKMGKKLVRFGGHDLAAGF
IVKAENLEEVKNIFEASIENIKIEKEKKSLKIDAEYSIENIDEDMFETMESISPYGLENP
HPLFIDRELSFENIKKFGVDERHFNGIIRKNGKNYHMVAFDLGHKINEIEAKIQKFDIVY
YPEKTLYRGEEIFQIRIKDIKIKDDFYEIFTK
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atgcattgggaatatagttcgctacctcagactcttattgatactaaggctgctcaatgg
aagaagaatagattacttactaccttactactcaatagaggctttgaagatggaaaaaaa
gcagatgaatttataagcccaaaaatttctgattttagagacccttttaaatttgaaaaa
atggaaaaagtagtagataaaattttagaaaaaagagaaaaaaaggaaaaagtttttatt
tatggagattatgacgttgatggaatcacagcagctgtatttcttgttctagtcttcaga
aacattggaatagaagtagactattacattcctaaccgaatggaagaaggctatgggctg
gataaaaaaaccattgactttattaacacagaaaatggaaagctggttatcactgttgat
actggtgtcaattctatagaagatgtaaaatatgcagagagtttagggatagatgtgata
gttactgatcatcacaaaagtataaaagaggaggaagatgatcatctccttctcttaaat
cccaaattaagtgatacttatgagtttaaatatctatctggtgctggagttgctttaaaa
gtagctcaaggtgtatatcaaaaattaaaaattgatataaaagatttatatcaatatatg
gatatagtaatgattggaactgttgctgatgtcgttcctatgactgatgaaaataggata
ataataaaacaaggtcttcgagctttgaaaaaaactaaagtaaaagggcttatgtatctt
ttgaaatatcttaaatttcaaaataagactataaatacaactgatgtaagttatttcata
tctcctctaattaattctcttggaagaataggtgtttctaaaatgggagctgattttttc
ttaaaagaggatgactttgaaatatataatataatagaggaaatgaaaaaatcaaataag
aaaagaagagagcttgaaaaaaatatatatgatgaagccaaccaggaaattgcaaaaata
ggaataaaaaatcttaaatgtatatttttaagttctgaaaagtggcatcctggagttatt
ggtgttgtatcttcaagattaagtgttaagtataatatacctgtaacacttgttgccttc
aaagatgaaattggaaaagcatcttgcagaagtataaaaggaataagtgttttcaatata
tttcagaaaatgggtaaaaaacttgtcagatttggtggtcatgaccttgctgctggcttt
atagtaaaagctgaaaaccttgaagaagtaaaaaatatttttgaagcaagtatagaaaat
ataaaaatagagaaagaaaaaaagagtttgaaaatagatgcagaatattctattgaaaac
attgatgaagatatgtttgaaactatggaaagtatatctccatatggacttgaaaatcca
catcctttatttattgatagagaactttcttttgaaaatatcaaaaaatttggtgtagat
gaaagacactttaatggaataataagaaaaaatggaaaaaattaccatatggtagcattt
gatttaggtcataaaataaatgaaatagaagctaaaattcaaaagtttgatattgtttat
tatcctgaaaaaactctatatagaggagaagaaattttccagataaggataaaagatatt
aaaataaaagatgatttttatgaaatttttactaaatag
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