Fragaria vesca (woodland strawberry): 101290766
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Entry
101290766 CDS
T02666
Name
(RefSeq) general negative regulator of transcription subunit 3
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101290766
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fve03019
]
101290766
Messenger RNA biogenesis [BR:
fve03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101290766
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
101290766
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
101290766
NCBI-ProteinID:
XP_011464446
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Position
LG5:complement(9520914..9528217)
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AA seq
901 aa
AA seq
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MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYESALVDARKQIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWINTVVGELESQIDSFEAEIEGVSVKKGKGRPPRLTHLETSITRHKA
HIMKLELILRLLDNDELSPEQVNDVKDFLEDYVERNQEDFDEFSEVDELYSTLPLDKVEL
EDLVIVPPGLVKGAPMIGLKTPLAASASQMPATVTSSNQPSTPVQEPVEDMVSQDNSNPD
NIAKTPPPKSSALASVASTPTGNQATPVSLNVSSLSLPGVTAVSAVAGSNAVHGITENAG
AALSSSPGSLSPSVKEEELGTFPGRRPSPSLSDTGVVRGVGKGGLAGQIPSSIPLSSSNV
VPSNTALGAVPSVTDVAKRNILGADERLGGSGVVQPLVSPLSHRMILPQASKSSDGSGPV
DSSNTSEATTIPGRAFSPSMVSGMQWRPGSSFPNQNEAGLFRGRTEIAPDQREKFLQRLQ
QVQQQGHSTIHSMPALAGGSSKQFSSQQQNPLLQQFNSQSSSVPSQAGMGLGVQAPGLGT
VSSTTLQQQINSIHQQSPQANPQALMSSGPKESDAGHPKVEDQQQQSIPDDSTSESAPSS
GIVKNLMNEDDMKASYAIDSLTGVSGSLTESSQVPRDIDLSPGQPLQSSQPSASLGVIGR
RSVSDLGTIGDNLSGSIANSGPGHDQLYNLQMLEAAFYKLPQPKDSERARSYTPRHPAIT
PPSYPQVQAPIVNNPAFWERLGSEQYSTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHR
KYNTWFQRHEEPKVATDEYEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELI
V
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
atgggggcgagtcggaagctccagggcgagatcgaccgcgttctgaagaaggtccaggaa
ggcgtagatgtcttcgacagtatctggaacaaggtttatgacacggacaatgcgaaccag
aaggagaagtttgaggccgacttgaagaaggagattaagaagctccagaggtacagggac
caaatcaagacttggattcagtccagtgaaatcaaggataagaaggtgagtgcgtcgtac
gagtcggctctggtggatgctcggaagcaaattgagcgtgaaatggaaaggtttaagata
tgcgaaaaggagaccaagacgaaagcgttttcgaaagagggattgggccagcaaccgaaa
actgatccgaaggagaaggctaaatcagagacaagggattggataaacactgtggttggg
gagttggaatctcagattgacagctttgaagctgagattgagggggtatcagtcaagaaa
ggaaagggcagaccgcctagactgacccatctagagacatctatcactcggcataaggct
catataatgaagttggaactgatcttaaggttgttggataatgatgaactgagtcctgag
caggtcaatgatgtcaaagactttttggaagactatgttgaacgtaatcaggaggacttt
gatgagtttagtgaagttgatgagctttacagcaccttaccattagacaaggtggagctt
gaagatctggttattgttcctcctggtcttgttaagggtgcaccgatgattggcttgaag
actccattggcagcatcagcatctcaaatgcctgccactgttacctccagtaaccagccg
agtactcctgtacaagagccggttgaggatatggtttcccaggataatagtaatccagat
aacattgctaaaactccacctccaaaaagcagtgcacttgcttctgttgcatcaacacca
actgggaatcaagcaacgcctgtctcgttgaatgtttcgtctctcagtttgcctggcgta
acagctgtttcagctgttgccggttcaaatgctgttcatggcatcacagagaatgcaggg
gctgcgctttcttcatctcctggaagtttgtctccttctgtgaaggaagaagaattagga
accttccctggacgtagaccatcaccatcgctttctgatactggagttgtgagaggcgtt
ggtaaaggtggcctcgctggccagatcccatctagtatacctcttagttctagcaatgta
gttcctagtaatactgccctgggtgcagtcccctctgttactgacgtggcaaagagaaat
attttgggagctgatgagagacttggaggtagtggcgtggtacagcctcttgtttcccct
ctgagtcaccggatgatcttgcctcaggcttccaaatccagtgatggaagtggtccagtt
gattctagtaatacaagtgaggctacaactatacctggccgagcattttctccgtctatg
gtctctggcatgcaatggaggccaggaagttccttcccaaaccagaatgaagcgggattg
tttcgtggaagaactgaaatagcacctgatcagagggagaagttcttgcagcggctccag
caagtgcagcaacaaggtcacagtaccattcatagcatgcccgctcttgctggtggaagt
tctaaacagttttcatcacagcagcaaaatccactcttgcaacagtttaattctcaaagc
tcatctgtaccttctcaagctggcatgggacttggggtacaggccccaggtcttggaacg
gtttcatccactaccttacagcagcagataaattccatccatcaacagtctccacaggct
aatccacaggcattgatgtctagtgggccaaaagaatctgatgctggtcatccaaaagtt
gaggaccagcagcaacagagtattcctgatgactcaacatctgaatccgctcctagttct
gggatcgtaaagaatctaatgaatgaggatgatatgaaagcgtcatatgcaatagattct
ctgactggagtttctggctctttgacagagtcttctcaagtaccacgagatatcgatctg
tctcctgggcaacctttgcagtctagtcaaccttctgctagccttggtgttattggccga
agaagtgtttctgatcttggtacaattggcgataacctctctggatcaattgctaattct
gggccggggcacgatcagttgtataatttgcagatgcttgaggctgctttttacaaactg
ccacaacccaaagactctgaacgtgcaagaagctacactccaaggcaccctgcaataact
cctcctagctatccccaagttcaagcacctatagttaataatcctgctttctgggaacgt
ttgggttctgaacagtattctactgacaccctgttctttgcattttactatcagcagaac
acttaccagcaatatttggctgccaaagagttgaagaagcaatcttggagataccacagg
aaatacaacacttggtttcaacgacatgaagagccaaaagtggccactgatgaatatgaa
caggggacatatgtgtactttgacttccacattgccaatgatgatctacaacatggatgg
tgtcaaaggatcaaaactgagtttacctttgaatacaactatcttgaagatgaacttatc
gtataa
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