Fragaria vesca (woodland strawberry): 101291060
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Entry
101291060 CDS
T02666
Name
(RefSeq) nuclear pore complex protein NUP96
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101291060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fve03019
]
101291060
03036 Chromosome and associated proteins [BR:
fve03036
]
101291060
Messenger RNA biogenesis [BR:
fve03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
101291060
Chromosome and associated proteins [BR:
fve03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
101291060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Motif
Other DBs
NCBI-GeneID:
101291060
NCBI-ProteinID:
XP_004301585
LinkDB
All DBs
Position
LG5:complement(18335784..18341263)
Genome browser
AA seq
1089 aa
AA seq
DB search
MDSVLMLQQLGDDNKKRPRCHEVKFMKEPSTKSRKINCNSPSPLPHCITRNLASPMNLLK
EDLYYTTRGSFGLDDNGKMLVLDHHNGNGGLLGYLPTLEAVDYYMQPSFEELAARERVDP
GYCSRVLDFTVGRFGYGAVKYPGETDVRCLELDKIVKFNRHEVIVYEDESAKPFVGRGLN
KPAEVTLMLQTRLPCVDQRQIEHIVKILRHSVEGQGAHFVSFNPENGEWKFFVNHFSRFG
LIDEDEEDMMMEDTDVGEDPPELNHDEMFDEGNQMDRTGTVLLHSLPAHLGLDPIKMQEM
RMLMFSDAEEEAEDFKESPSHYNPSFGKDYSRSPLQNAQRISHRSSPPAVRKTPLALLGY
KHGSFDSNSPGAILMAQENKALPLKTLKEGFKLDLSRDTPVTRKDSRNIVDAGLFMGRSF
RVGWGPNGVLVHAGAPIGSSGSQRVLSSVINIEKVAIDNVVRDESNKVRAELVETAITSP
LELHKGLYHETKEVEIGSFSLRLQKLVSNQFMLSDICRSYVDNIERQLEVPGLSSSACLV
LTHQIMIWELIKVLFSERENGGKLESYGVDAKEEMVQDEKPPSQETDPEAFPLIRRAEFS
YWLQENVHDRVEEIISLNESNYLESILLLLSGRQLDEAVELAASQGDVRLACLLSQSGGS
MVNRSDIARQLELWSINGLDMSFIEKDRIRLYELLAGNVHGAFHDIEVDWKRFLGLMMWY
HLAPNTPLPIVFRTYQDLLNENKAPFPVPVYIDGCVKETVDQSAVKRCDLSYYLMMLHGS
EDSEVDFLKTMFSAFSSTYDPLDYHMIWHQRAVLEAVGVISANDLHVLDMTFVSQLLCLG
QCHWAIYVVLHMAHCEDFPYLHANLIREILFQYCDSWSSQISQRQFIEGLGIPKAWIHEA
MAVYFNYYGDLPKALEHFIECENWQKAHSIFVTSVAHTLFLSAKHSDIWRLATSMEDHKS
EIENWDLGAGIYISFYLTRSSLQGADDAMSELDSVESKNAACREVLGQLNKSLAVWGARL
PMDVRVVYSKMADEICNLLLLDINECPTRDVQLSCFDTVFSAPIPQDVRSNHLQDAVSLF
TCFLSEVAT
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atggattctgtattgatgttgcagcaattgggtgatgataataagaagaggcctagatgt
cacgaggtcaagttcatgaaagaaccaagcaccaaatccaggaaaatcaactgcaactct
ccctctccactacctcactgcattactaggaacttggcttcgccaatgaatctgttaaag
gaagatctgtattacacaactaggggttccttcgggttggatgataatggtaagatgtta
gtgttagatcatcataatggtaatggcggtttgttaggctacctaccgactcttgaggcg
gttgattactatatgcagccttcctttgaggaattggctgctcgagaacgtgtggatcct
ggttattgtagccgagttttggactttacggttgggaggtttggttacggagctgtcaag
tatcctggggagactgatgttaggtgtttggagttggataaaattgtgaaattcaacagg
cacgaggtgattgtatatgaagacgagagtgctaagccttttgttggccggggccttaac
aagcctgctgaagtaactctgatgctacaaacgagactgccgtgtgttgaccagaggcag
atagaacatattgtgaaaatattgagacacagcgtggagggacaaggagctcattttgtt
tcatttaatccggaaaatggggagtggaaattctttgttaaccattttagtagatttggt
ttgattgatgaagatgaagaagatatgatgatggaagatactgatgtaggtgaagatcct
ccagaattaaaccatgatgagatgtttgatgaaggaaaccagatggatcgtactggaact
gtgcttttgcattctcttcctgctcatcttgggcttgaccccatcaagatgcaagaaatg
agaatgttgatgttttctgatgcggaggaggaagccgaggattttaaagaatcaccttca
cattataatccatcatttggtaaagactactcgagatctcctttacaaaatgctcaaagg
attagtcatcgatcttctccaccagctgttcgaaagacccctctagcattgctcgggtac
aagcatggtagttttgactcaaactctcctggtgccattctaatggcacaggaaaacaaa
gccttgccattgaagacactaaaagaaggttttaagcttgatctcagtagagacacacca
gtaactagaaaagattctcgcaacatagttgatgcaggtttgtttatgggtaggtcattt
cgagtaggatggggcccaaatggagttcttgtccatgctggcgcaccaataggcagtagt
ggttcccaaagggtgctgtcatctgtaattaatatagagaaggttgctattgacaatgtt
gtcagagatgaaagtaacaaggttagagcagaacttgttgaaacagctattacttctcca
ttggagcttcacaaaggactatatcatgaaacaaaagaagttgaaattggatccttcagt
ctgagacttcagaagcttgtttcgaatcagtttatgctatcagatatttgcaggagctat
gtagataatatcgagaggcagctggaggttccgggtttatcttcatctgcttgtttggtt
ttgacacatcaaattatgatatgggaattgataaaagttcttttctctgaaagagaaaat
ggcgggaaactggaatcttatggtgttgatgccaaggaagaaatggtgcaggatgagaag
cccccttcacaagaaaccgacccggaagcatttcctcttattaggagggccgagttcagt
tactggttgcaagaaaatgtgcatgatagagtagaagaaatcatctccttaaatgagtcc
aattatctggaatccatattattacttctgagtgggcggcagctggatgaagctgtagaa
ttggctgcttctcagggagatgtgagattggcttgtttgttaagtcaatctggtgggtcc
atggttaatcgttctgacatcgcacgacagcttgagctttggagtattaatggactggat
atgagtttcattgagaaagataggataaggctttatgagttgcttgctggtaatgtccac
ggtgcttttcatgatattgaagttgattggaagaggtttttagggttaatgatgtggtat
cacttggcacctaacactccattacctattgttttccgcacatatcaagatcttcttaat
gagaataaggctccattccctgttcctgtttatattgatggatgtgtaaaagagactgtg
gatcagagtgcagtgaaacgctgtgacctatcatattaccttatgatgctacatggcagc
gaagatagtgaagttgatttcctgaagaccatgttcagtgctttctcgtcaacatatgat
ccacttgattaccatatgatctggcatcagcgtgctgtgttggaagcagttggagtcatc
agtgccaatgatcttcatgttcttgacatgacatttgtttcccagttattgtgtcttggg
caatgtcattgggccatctatgtggtccttcacatggcccattgtgaagactttccatat
cttcatgctaatctaattcgagaaattttgttccagtattgtgattcgtggagctcacaa
atatcacaacgccaattcattgagggcttgggtattccaaaagcatggattcatgaggct
atggcagtttatttcaattattatggggatcttccgaaggcgcttgaacactttattgaa
tgtgaaaactggcagaaagctcattctatttttgtaacctctgttgcgcacacattgttc
ttgtctgccaaacactcagatatatggaggctcgcaacttcaatggaggaccacaaatca
gaaattgagaattgggacttgggagctggcatctacatttcattctatctaacaagaagt
tcgttgcagggagctgatgatgccatgagtgaactggattctgttgaaagcaaaaatgct
gcttgcagagaggttcttggtcagttaaacaagtctttggctgtttggggtgccaggcta
ccaatggacgtgagagtcgtgtattcaaagatggcagatgagatttgcaacttgcttttg
cttgatattaatgaatgcccaacacgagatgttcagttaagttgctttgacactgttttc
agtgcgcccatacctcaagacgttcgctcaaatcatttgcaggatgcagtgtcactcttt
acatgctttttatcggaagttgctacatag
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