Fragaria vesca (woodland strawberry): 101291094
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Entry
101291094 CDS
T02666
Name
(RefSeq) SNF2 domain-containing protein CLASSY 1-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
101291094
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fve03400
]
101291094
DNA repair and recombination proteins [BR:
fve03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
101291094
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SAWADEE
nSTAND3
Motif
Other DBs
NCBI-GeneID:
101291094
NCBI-ProteinID:
XP_004307689
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Position
LG7:complement(18593028..18599790)
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AA seq
1287 aa
AA seq
DB search
MKIKRHLYRAKHPFDAHPFEALCCGSWKGVELIRLSNGTMNMKFVDHPCVIQDKGPFANL
RVRSRRATLYDCICLLRPSVDICVLSNSDHTESSDEKRRDAICVDARISSIERGPHDSQC
SCRFHVNFYVNQGPLGSERATLKKETEVIGIDQVFILQRLDRNSCRNQYYRWDRSVDSSS
LPNTKLLLGKFLSDLSWLLVTSSLKQIVFDVRSVQNKIVYQIFSGNDDTTPSDSGNSFKA
VNFGVENGIPVPIILQLVPDDSTGGDPACDMHEDRPSPTSDFPELRRSKRRKTQPDRFLA
CDAPSEIQIGPIRSRPYKIDQSRDDSDDELYLPLSYLFRKKTSTSLEEDSTEAEQNADSK
RKRSNSSDNDDLFECKESKIKWMKVKSGVAKNKTKKCRADQLAIVPASVKCDQLTPGNFP
PNANGFPPKANGPANRSKDSGEFSAKHYYRFSTSKAQKPKRNKIAGLEDMDVHTKWDGGA
SSSRFQRRGYHNAYHHPPIRTKRTDRYTGAYSKRSLNAGAYKELINKFLKDMDCSNKQEP
NIMDQWKNFKEKKNFDQKDETEMPEDEQEEEMSEEDRLWKEFDLVLASCYLLGDEESNGA
TSGNFRQNSGPGCQHEFTLDEEIGLKCIICGFVKTEIRHVTPPFVRNPCGFTDDKKPDEE
DPDPKRAEYEQFNFFHKRDIPVDEPVPEENENVWALIPELRKKLLFHQKKAFEFLWKNIA
GSMEPALMEKKSKKNGGCVISHTPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTW
YKEFIKWNIPIPVYLIHGRRTYRVFRNNSASYTRGPKPTDDVMHVLDCLEKIQKWHAQPS
VLVMGYTSFLTLMREDSKFVHRRFMAQVLRESPGILVLDEGHNPRSTKSRLRKGLMKVET
DLRILLSGTLFQNNFCEYFNTLCLARPKFVNEVLKALDPKYRRKKKALKDKARHLMEARA
RKLFLDKIAKKIDSNEGEDQRIEGLNKLRKITNRFIDVYEGGNSDTLPGLQIYTLLMNTT
DIQQVILDRLQQIMATYKGYPLELELLITLGSIHPWLIKTAACADKFFSPEELLALEQYK
YDLHKGSKVKFVLNLVYRVTRKEKVLIFCHNIAPVKLFLELFERVFQWERGREVLVLTGD
LELFERGKVMDKFEEPGGASRVLLASITACAEGISLTAASRVILLDSEWNPSKTKQAIAR
AFRPGQQKVVYVYQLLATGTLEEDKYRRTTWKEWVSSMIFSEAFVEDPSRWQAEKIEDDI
LREMVGEDKSKAFHMIMKNEKASTHTS
NT seq
3864 nt
NT seq
+upstream
nt +downstream
nt
atgaagataaagaggcatctgtatcgagctaagcatccatttgatgctcatccctttgag
gctctttgctgtggatcatggaaaggcgtggaacttataagacttagcaatggaactatg
aacatgaaatttgtagaccatccctgtgtgattcaggataaaggtccatttgccaacctt
cgagtaagatcaagaagagcaactttatatgattgcatttgcttgttgaggcccagtgtt
gatatttgtgtgctttcaaactctgatcatacagagagttcggatgagaaaaggcgagat
gcgatttgtgttgatgctagaataagttctattgaaagggggcctcatgactctcaatgc
tcatgccgatttcatgtcaacttttatgttaaccaaggacctctaggttcagagagagca
acactcaaaaaagaaactgaagttattggaattgatcaggttttcattttacaaaggctt
gacaggaattcttgtagaaatcagtattaccgttgggatcgctctgtggacagctcttct
ctgccaaacactaaattgctattggggaaattcttatccgacctgtcatggttgcttgtt
acatcttccttgaagcagattgtatttgatgtaagatcagtgcagaacaagattgtgtat
caaatttttagtggtaatgatgacacaactccatcagactctggaaactcttttaaagct
gtgaatttcggagtagaaaatgggatcccagtacctataatacttcagttggttccagat
gactctactgggggtgatcctgcttgtgacatgcatgaagatagaccatctccaacttct
gattttccagaattgcggcgttccaagcgtcgaaagacacaacctgatcgtttccttgca
tgtgatgctccctctgagatacaaataggccccattcgtagcaggccatataagatagat
caatcacgagatgattctgatgacgagttgtacttaccactatcatacctttttcgtaag
aagacaagcacctcgttggaagaggatagtactgaggcagagcaaaacgctgattctaag
aggaagcgatcaaactccagtgacaatgatgatctatttgaatgcaaagaaagcaagatt
aagtggatgaaagtgaaatcaggtgtggctaaaaataagacaaagaaatgtcgagctgat
caactagccattgttcctgcgtctgtcaaatgtgatcagctaacccctggaaactttcct
ccaaatgctaatggctttcctccaaaagccaatggtcctgcaaatcgttcaaaagacagt
ggtgaattttctgccaagcattattatcgtttcagtacttctaaagcacagaaaccgaaa
agaaacaaaattgctggcttggaagacatggatgttcatacaaaatgggatggaggtgca
tcctctagcagatttcagagaagaggctatcataacgcatatcatcatccccctatacga
acaaaaaggacagatcggtatactggagcttattcaaagagatccttaaatgcaggtgca
tacaaggagctgataaataagttcttgaaagacatggattgctcaaacaagcaagaacca
aacattatggaccagtggaaaaatttcaaggaaaaaaagaattttgaccaaaaggacgaa
actgaaatgccagaagatgagcaggaggaggaaatgtctgaggaggataggctgtggaaa
gaatttgatttagtattggcatcatgttatcttctaggtgatgaggaatcaaatggtgcg
acttcaggtaactttagacaaaattcaggtccaggttgccagcatgagttcactttggat
gaagaaattgggcttaagtgcattatatgtggctttgtgaagactgaaatcagacatgta
acacccccctttgtgcgaaacccgtgtgggttcacagatgataaaaaaccagatgaagaa
gatccagatcctaaaagagctgaatatgagcaattcaatttcttccacaaacgtgatata
cctgtggatgagcctgttccagaagaaaatgaaaatgtttgggctttaattcctgaactt
agaaagaaactgctattccaccaaaaaaaggcttttgaatttttatggaagaatattgca
ggatctatggaaccagcattgatggaaaagaaatccaagaaaaatggtggctgtgttata
tctcatactcctggagctgggaaaactttcttgatcattgcatttcttgttagctacctg
aagttgttccctgggaaacgacctttagtccttgctccaaagacaacactctacacctgg
tacaaggaattcattaaatggaacattcctattcctgtttatctaattcacggtcgtaga
acctatcgagtgttcaggaataactcagcaagctatacaagaggcccgaagccaactgat
gatgtgatgcatgttctcgattgcctagaaaaaatacagaagtggcatgcacaacctagt
gtacttgtcatggggtatacttctttcctaacattgatgcgtgaagattcaaagtttgtc
cacagaagatttatggctcaagtgctgagggaaagtccagggatcctagttctagatgaa
gggcacaaccccagaagtaccaaatcaaggttgaggaagggattgatgaaagttgaaact
gacttgagaatattgctttcaggtactttgtttcagaacaatttctgtgaatacttcaac
acactttgtttagcaaggccaaagtttgtgaatgaagttttgaaggcattggacccaaaa
tacagaaggaaaaagaaggcactgaaagacaaagcacgccatttgatggaagctcgagcc
agaaagttgttcttggataaaattgccaagaaaattgattcaaacgaaggggaagatcag
aggattgaaggtctcaacaagctgagaaagataacaaacagatttatagatgtgtatgaa
ggtgggaattcagacacccttcctggtctacagatttacaccttgttgatgaacaccact
gacattcaacaagtgattttggatagactgcaacaaataatggccacgtacaaagggtat
cccttggaactagaacttctgatcacccttggatcaatacatccttggctaatcaaaact
gcagcttgtgctgataagttctttagtcctgaagaactgttggcacttgagcaatacaag
tatgatttgcacaaagggtccaaagtcaagtttgttttgaacctggtttaccgtgttact
cgaaaagaaaaggttttgatcttctgccacaacattgcacctgtgaaactctttctagaa
ttgtttgagagggtctttcaatgggagcgaggcagagaagttttggttctgaccggggat
cttgagttatttgaacgtggaaaggttatggacaaatttgaagaaccaggtggagcctca
agggttctgcttgcatctatcacagcttgtgctgaaggcattagtctgacagctgcatct
cgggttatcttattggactccgaatggaacccttcgaagacgaagcaagctatagcacga
gcttttaggcctggtcagcaaaaggttgtgtatgtttatcagctattggcaacaggaaca
ctcgaagaagacaagtacagaaggactacatggaaagagtgggtatccagcatgatattc
agtgaggcatttgtggaggatccttctcgctggcaagctgagaagattgaagatgatata
ttgagggagatggtgggtgaagataagagtaaggcattccatatgatcatgaaaaatgaa
aaggcttcaacacatacttcgtag
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