Fragaria vesca (woodland strawberry): 101291479
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Entry
101291479 CDS
T02666
Name
(RefSeq) E3 ubiquitin-protein ligase SHPRH
KO
K15710
E3 ubiquitin-protein ligase SHPRH [EC:5.6.2.-
2.3.2.27
]
Organism
fve
Fragaria vesca (woodland strawberry)
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
fve04121
]
101291479
Enzymes [BR:
fve01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
101291479
Ubiquitin system [BR:
fve04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
101291479
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SHPRH_helical-1st
Helicase_C
SHPRH_helical-2nd
zf-RING_UBOX
PHD
zf-C3HC4
PHD_5
zf-RING_2
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
101291479
NCBI-ProteinID:
XP_004308992
LinkDB
All DBs
Position
LG7:complement(19140007..19149682)
Genome browser
AA seq
1662 aa
AA seq
DB search
MGRRKQNRPHRSGGIVLESQGTAGREELDEGRVLNGEAAQKNGLDEVERLYFVEVDPTNW
GSDEHFDIAEVVLKDLVFGEGFCSDVLSGGLDRGSYYLRFRLSNVKEFVNRIKLGHWPLL
CSADISFEFVKTCSSEDMDMDMEKDTCSVILSGSFDGPDEGVSGLVHLASLKFMTLRPAL
SIGFVDNTSTITVRVEILKSAFDACESLLDNTRQVWKKSMMNVMAWLHPEVVTSEGRYGV
GKSTDMELDLHTDTGHTNSNHSKHPRFDVAGFYEAIKPSKADAMLQDVLPDLLPELKPYQ
RRAAYWMVQREKNNTERSQFLSPFCLPLQFLDRCSKMFYNPFSGNVSLHQEHSSTYVSGG
ILADEMGMGKTVELLACIFAHQKSADEDPILADAEIQDTEDLKIKLKRLKRERVECICGA
VSDNGRYRGLWVQCDICDAWQHADCVGYSPSGKTIKSNEASNEKEHDKSLVDKKYSRKKN
TTTIDVRDEEYICQLCSELTQATNSPVATGATLIICPASILPQWHSEIMRHTCSGSLKTC
VYEGVREVSFTDTSVIDISELISADIVLTTYDVLKADLSHDSDRHEGDRRLMRFQKRYPV
VPTILTRIFWWRICLDEAQMVESNVGPATEMAMRLYAKHRWCITGTPIQRKLDDLYGLLR
FLKAYPFDASRWWIEVIRDPYERRDAGAMEFTHKFFKEIMWRSSKVHVADELQLPPQEEC
LSWLTLSPVEEHFYQRQHETCVSYAREVIQSLKDDIMKRKVKGCSAVKSSDYFITHAEAG
KLLNTLLKLRQASCHPQVGSSGLRLRSLQQSPMTMEEILMVLVSKTKIEGEEALRRLVVA
LNGLAGIAVIEQNFTQAVSLYKESLTLAEEHAEDFRLDPLLSIHIHHNLAEILPLATSSF
PSKAEHMGPCHEHIAKRQKLTGGDNSSENDFSSAQEYDNVSHTSCSSFTDVSLRIVCDNL
KQKYLSAFNSKLCMTQQEFKKSYTQVCSTISEVKDVSTVWWLEALLHAEKNHDICSLLIR
KIEEALIGNLNSSNSSRIPSRLRSISAIKYHMQIGLDQLEESRKMLLDRLLEIDQTMEKP
KEEDIQRVRYCRNCKAHDGGPLCVLCEVDELFQGYEARLFRLEKVSGGVATSAEEAVDLQ
KKNSALNRFYQNLSQPIKDSASPKYIQESKKRDVGKVVVSKSPSELEVVLGVIKNHCKAH
LGKEGISEATKHLQILEGMRKEYGHARSLAIAQAQILQAYDEINMATTRLRLREDENDKS
LDALSEDELPSANVLNTSEKFASLSLLSCIKGKLRYLKGLEAKQKMPLRSPNHSSVTEEE
ATVSTSTQQRNECVPTGDKETCPVCQEQLTIRKMVFPCGHLTCCKCLFVITERLLNGKRV
QDKWVKCPTCRQHTDVANIAFADDGQSEPCGSGRLQAIQSREECEKSIIVQGSYGTKIEA
VTRRIMWIKSTDPEAKVLVFSSWNDVLDVLEHAFIANGITFIRMKGGRKSQVAISEFKGE
KRSLTGYHKLHGRNPEGRSIQVLLLLIQHGANGLNLLEAKHVILIEPLLNPAVEAQAISR
VHRIGQTNKTLAHRFIVKGTVEESIYKLNKSRNSTTFISGNTKNQDQPLLTLKDIEALFS
IVPSLPIPETDEKPTESESLRHLPPSVAAAIAAEKRLNSSSS
NT seq
4989 nt
NT seq
+upstream
nt +downstream
nt
atgggtagaaggaagcaaaaccggcctcaccggtccggtgggattgtgttagagagtcag
ggaactgctggcagggaagaattggatgaggggagggttttaaatggggaagctgcgcaa
aagaatggcttggatgaggttgagagactgtattttgtggaagttgatccgactaattgg
gggtcggatgagcactttgatattgctgaagtggttttaaaagatttggttttcggagaa
gggttctgcagtgatgttcttagtgggggtttggatcgcggtagttactatttaaggttc
cggttatctaatgtgaaggagtttgttaatcgtattaagcttggtcactggccattgttg
tgctctgctgatatatcctttgaatttgttaaaacatgttcaagtgaggatatggatatg
gatatggagaaggacacgtgctcagtgatcttgtcagggagtttcgatgggccagatgaa
ggtgtttctggtctggttcacttggccagtttgaagtttatgacactgaggccagctctg
tcaattgggtttgtggataatacgtcaaccatcacggtcagggtggaaatacttaagagt
gcatttgatgcttgtgagtcacttttggacaatactaggcaagtatggaaaaagagtatg
atgaatgtcatggcttggctacacccagaagtagtgacttcggagggtaggtatggagtc
ggtaaatcaacagacatggaacttgatttgcatactgacactggacatactaattcaaat
catagtaaacatccaagatttgatgttgctgggttctatgaagccattaaaccctcaaaa
gcagatgccatgcttcaagatgtcctgcctgatttgcttcctgaactgaaaccatatcag
cgccgtgcagcttactggatggtacagagggagaaaaacaacacagaaagaagtcagttc
ttatcgcctttttgtttgcccttgcaatttctcgatagatgttcaaaaatgttctacaac
ccattcagtggaaacgtttcgctgcaccaagagcattcttcaacatacgtctctggtggt
attcttgctgatgagatgggcatggggaaaactgttgaacttctcgcttgcatctttgct
catcagaagtcagcagatgaagaccccatacttgctgatgctgaaattcaagataccgag
gatctgaaaataaagcttaaaagattaaaaagggagcgagttgaatgtatatgtggagct
gtgagtgacaatggcagatacagaggactatgggtacagtgtgacatatgtgatgcatgg
caacatgccgattgtgttggctattcacctagtggaaagactataaagtccaacgaggct
tctaacgaaaaagaacatgacaagagtttggtggataagaagtatagtagaaagaagaat
acaaccacaatagatgtgagagatgaggaatatatatgccagctgtgctcagaattgaca
caggccactaattctcctgttgctactggtgccactcttataatctgtccagcttctata
ttaccacagtggcattctgaaattatgcgacatacatgttcgggttctctaaagacttgt
gtctatgaaggtgtaagagaggtgtcttttacagacacatctgtaattgatatcagtgaa
ctcattagtgctgatattgtattgacgacatatgatgtgcttaaagcggacctgtcacat
gactctgataggcatgaaggtgatcggcgcttaatgagattccaaaagagataccctgtt
gttccaactatccttaccagaatattctggtggagaatttgtttggatgaggctcagatg
gtggagagtaatgttggtcctgcaacagaaatggctatgcgcctgtatgcaaagcatcgt
tggtgcataacggggactcctatacaacgtaaacttgatgacttatatggacttctacgg
tttcttaaagcatacccattcgatgcttctcggtggtggattgaagttatacgagatcca
tatgagaggagagatgcaggagctatggaatttacacataaattctttaaagaaatcatg
tggcgatcttcaaaagtgcatgttgcagatgagttgcagcttccacctcaggaagaatgt
ctctcttggctcactctatctccagttgaagagcatttttaccagaggcaacatgaaact
tgtgttagttatgcccgagaagttattcaaagtttgaaagatgatattatgaagagaaaa
gtcaaaggatgctcagcagttaaatcatcagattatttcatcacacatgcagaggcagga
aagctgctgaacacacttctgaagcttcgccaagccagctgtcaccctcaagtaggaagc
tcaggcctgcgtttgcgttctctccaacagtctcccatgactatggaggaaattttaatg
gttcttgttagtaaaacaaagatagaaggagaggaagctctcagaaggttagttgttgct
cttaatggccttgctgggatagctgtaattgagcaaaattttactcaagctgtatcactg
tataaggaatcgttgactttagctgaagagcacgccgaggatttccgcctggatcctttg
ttgagtattcacattcatcataatcttgctgaaatacttccattagcaacaagcagtttc
ccttcaaaagcagaacatatgggcccctgtcatgaacatatagcgaagaggcaaaaactg
actgggggagataactcatcagagaatgacttttctagcgcccaagaatatgataatgtt
tcccatacatcatgtagttccttcactgacgtatctttgagaatagtctgtgacaatctt
aaacaaaagtatttatctgcatttaattcaaagttatgcatgactcagcaagagtttaag
aagtcttacacccaggtttgtagcacaattagtgaggtaaaagatgtcagcacagtctgg
tggttagaagcccttcttcatgctgaaaagaatcatgacatttgtagtctgttgatcaga
aagattgaagaggcgctcataggaaatctcaacagttcaaattcatctagaattccatct
cgtttacgaagcataagcgctataaagtatcacatgcagatcggtttggaccaactagaa
gaatctaggaaaatgttacttgatcgacttttagaaattgatcagacaatggagaagcca
aaagaggaggatatccagcgtgtgagatactgtcgaaattgcaaagctcacgatggtggt
cccttgtgtgttctttgtgaagtagatgaattatttcagggttatgaagcaaggctcttt
cgtcttgagaaagtatccggaggtgttgctacctctgctgaagaggctgtggatttgcag
aagaaaaactctgctcttaatcgtttctatcaaaatttgtcacagccaattaaggattca
gcatcacccaaatatattcaagaatcaaagaagagagatgttggaaaagttgtggtttca
aaatccccatctgaattagaggttgttcttggagtcataaaaaaccattgcaaggcccat
ttaggaaaggaagggatatcagaagctaccaagcacctacaaattcttgagggcatgcgc
aaggagtatggccatgcaagatccttggcaatagctcaagctcagattctgcaagcttat
gatgaaattaatatggcaactacaaggttgcgtctcagggaagatgagaatgataaatct
cttgatgcattaagtgaagatgaattaccttcagctaacgttttgaacaccagtgaaaag
tttgcatccttgagcttgttgtcgtgtataaaagggaaacttcgttatttgaagggtttg
gaagctaaacaaaaaatgccattgagaagtccaaatcattcctcggtaactgaagaggaa
gccaccgtgtcaacttctacacaacagagaaatgaatgcgtacctacaggtgataaagaa
acttgcccagtatgtcaagaacagttaaccattcgaaagatggttttcccgtgtggacat
cttacttgctgtaaatgtttatttgtaattactgagagactactcaatgggaaaagggtt
caagataagtgggtaaaatgcccaacatgtcgccagcatactgatgttgcaaatattgct
tttgctgatgatggacaaagtgaaccttgtggttctggtaggcttcaggcaatccaaagt
cgtgaagagtgtgaaaaatctattatagttcaaggttcatatggaacaaagattgaagca
gttacaagaagaattatgtggataaagtctacagatccagaggctaaagttcttgttttt
tcaagctggaatgatgtccttgacgtgttggagcatgccttcattgctaatggcattacc
tttataaggatgaaaggaggaaggaaatcacaagttgccattagtgaattcaaaggagaa
aagagaagcttaacaggatatcacaagttgcatggccgaaacccagaaggaagatctatt
caagtattgctgctcttaattcagcacggagcgaatggcctcaatctgttggaagcgaag
catgttattctcatagagccgcttcttaatccagcagtagaagcacaagctatcagcagg
gtacaccgaattggacagacaaataagacccttgctcatcgttttatagttaaaggcaca
gttgaagagagcatatacaagctcaacaaaagcaggaatagcactaccttcattagcggt
aacacaaagaaccaagatcagcccttattgacactaaaagacattgaagccttattttca
atagtgccatcattacccataccagagactgatgaaaagccaactgaaagtgaaagctta
agacatttgccaccttctgtggctgctgccattgctgctgagaagcggctcaattcgagt
tcttcatga
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integrated database retrieval system
