Fragaria vesca (woodland strawberry): 101292147
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Entry
101292147 CDS
T02666
Name
(RefSeq) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
101292147
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fve03400
]
101292147
Enzymes [BR:
fve01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
101292147
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
101292147
DNA repair and recombination proteins [BR:
fve03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
101292147
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
Fpg-like_C
NFACT_N
SRP-alpha_N
Motif
Other DBs
NCBI-GeneID:
101292147
NCBI-ProteinID:
XP_004305496
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Position
LG6:17406843..17410812
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AA seq
397 aa
AA seq
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MPELPEVEAARRAIQDNCVGKKITKAIVADDSKVIDGVSRADFEASLLGKTIISAHRKGK
NMWLQLDSPPFPSFQFGMAGAVYIKGVAVTKYKRSAVKDTDEWPSKYSKVFVQLDDGLEF
SFTDKRRFAKVRLLKDPTSVPPISELGPDALLEPMTVDVLFASLSKKKISIKALLLDQSF
ISGIGNWVADEVLYQARIHPEQSSATLSKECVEALHKSIKEVIEKSVEVGADSDQFPSNW
IFHSREKKPGNVLVDGKKIDFITVGGRTSAFVPELQKLTGNQAANAESKRTSKRVDDVDE
EASDKEVKGTAKSRKGRKPGGQAKRSTVKRKSKGSDEDNDNDDSTDDVDHDDNDDSADED
MKNRTRKVTTNKQSKAEMTSKKKKQTSQNAKPKKRAK
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgccagagctaccggaggtggaggcggcccggagggccatacaggacaactgcgtcggg
aagaagatcacgaaagcgatcgtcgccgacgactccaaagtcatcgacggagtctcgcgc
gcggacttcgaggcatcgctattggggaagaccatcatctccgcccaccgtaagggcaag
aacatgtggctccaactcgactcccctcctttcccttccttccaattcgggatggcgggt
gcggtgtatattaaaggggttgcggtcaccaaatacaagagatctgctgttaaggacact
gatgagtggccgtccaaatactccaaggtttttgtccaactggatgacggtctggagttc
tcattcactgacaaaaggcgatttgcaaaagtgcgcctgctcaaagatccaacttctgtg
ccccccatatctgagcttgggcctgatgctctcttggagccaatgactgtcgatgtacta
tttgcatcattaagcaagaagaaaatatcaattaaggctctattgcttgatcagagcttt
atatcaggaattggcaattgggttgctgatgaagtactataccaagcaagaattcatccg
gagcaaagttctgccaccctgtccaaagaatgtgtcgaagctttacacaaaagcatcaaa
gaggtcattgaaaaatcagttgaagttggagcagatagtgatcaatttcctagtaattgg
atttttcattcccgtgaaaagaaaccgggaaatgtgttggttgatgggaagaaaattgat
tttatcacagttggtggcaggacttcagcgtttgtaccagagcttcagaagttaactgga
aatcaagctgccaatgcagaaagtaaaagaactagtaagcgtgtagatgatgttgatgaa
gaagcaagtgataaagaagtcaagggaactgccaaatctaggaaagggaggaagcctgga
ggtcaggccaagaggtctacagtgaaaagaaaatcaaaaggcagtgatgaagacaatgac
aatgatgattccactgatgatgtcgatcatgatgacaatgatgattctgctgatgaagat
atgaagaacagaacaagaaaggtgacaactaataagcaatccaaagcagagatgacatct
aagaaaaagaagcagaccagtcaaaatgccaaacctaagaagagagcgaagtag
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