Fragaria vesca (woodland strawberry): 101292154
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Entry
101292154 CDS
T02666
Name
(RefSeq) sm-like protein LSM7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03018
RNA degradation
fve03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101292154
09123 Folding, sorting and degradation
03018 RNA degradation
101292154
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fve03019
]
101292154
03041 Spliceosome [BR:
fve03041
]
101292154
Messenger RNA biogenesis [BR:
fve03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101292154
mRNA degradation factors
5'-3' decay
Lsm complex
101292154
Spliceosome [BR:
fve03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
101292154
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Hfq
Motif
Other DBs
NCBI-GeneID:
101292154
NCBI-ProteinID:
XP_004306521
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Position
LG7:1488232..1491773
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AA seq
99 aa
AA seq
DB search
MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFIRDSDDPLKT
TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFSQPDGA
NT seq
300 nt
NT seq
+upstream
nt +downstream
nt
atgtcagggaggaaagaaacagtgttggacttggccaagtttgtggacaaaggtgttcaa
gtcaagctcactggtggtagacaagtgacagggactctgaaaggatatgatcagttgtta
aaccttgttctagatgaagcagttgagttcataagagattctgatgatccactgaagact
actgatcaaaccaggcgcctcggcctaattgtttgtaggggaactgctgtgatgcttgtg
tcgccaacagatggtacagatgagattgctaacccctttagccagccagatggtgcctaa
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