Fragaria vesca (woodland strawberry): 101292275
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Entry
101292275 CDS
T02666
Name
(RefSeq) RNA polymerase sigma factor sigC
KO
K03093
RNA polymerase sigma-I factor
Organism
fve
Fragaria vesca (woodland strawberry)
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fve03021
]
101292275
Transcription machinery [BR:
fve03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
101292275
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Motif
Other DBs
NCBI-GeneID:
101292275
NCBI-ProteinID:
XP_004291147
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Position
LG2:21462873..21466208
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AA seq
545 aa
AA seq
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MGLGFRLNLKCGFPIHNSHWQTNSPSKLPSSSVRGREGSFSSAGLSFLSVISEECETSSK
DPLKVYTCPSASPQLLDDGLSEMEEKMNPRRMSKSGSANMIDDKEYSFMSSAGLRTSHYT
LLLQNLNVLEETFADSGVSKLEKEILLQLGRLGALKLFEICLSRTLKTSSFLDLSDIPTE
PIEKHKTERKNIVRSGKKEEQKSRKRTSYDSKKFSGTLPVKQMREGFKKPNPSSVRRASN
SRSRRLMMAKNEAEMSVGVKVIADLERLKVTLEKETGKVPTLRCWAEAAGVDEKVLQQQL
HFGWYCQDELVRSTRSLVLYLARNYRGLGVALDDLLQAGNLGLLQGAERFDPSRGYRFST
YVQYWIRKSMSRLVAQHARGIKIPNTLSKAINRIQKARKANYNSHMKYPDDEEIAKITGL
SLAKISSASRCLRVVGSVDHKIWECSAGTYMEFTPDIAVETPEESVMRQHMKNDIHVLLE
GLNSREKKVLALRYGLNYCNPKSLEEIGRLFHVSKEWIRKIEKNALTKLRNEESNKNLSH
YLKQW
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atgggtttgggttttaggctgaacctcaagtgtggttttcctattcataattctcattgg
caaaccaattctccttccaagcttccatcttcttctgttagaggcagggaaggctctttc
agttcagcagggctgtcctttctgtctgttatatctgaggaatgtgagacttctagtaaa
gatcctctgaaagtgtacacgtgtccatctgcatccccacaactcttggatgatggttta
tcagaaatggaagagaagatgaaccctaggaggatgtcaaagagtggctcagctaacatg
attgatgataaagagtacagctttatgtccagtgcagggttaagaacatctcattatacc
ttgttactgcagaatcttaatgttttggaggagacttttgctgattcaggtgtgtcaaag
ttggaaaaggagatcctgttgcaattaggaaggctcggagctctgaagttatttgagatc
tgtctatcaagaacgcttaaaacctcgagctttttggatttatctgacatacctactgaa
ccgattgaaaagcataagacggaaaggaagaatattgtccgttccggcaaaaaggaagag
caaaaatcaaggaaaagaacatcatatgattccaaaaagttttctggtaccttgcctgtg
aaacaaatgagggaaggttttaaaaagcctaatccttcatcagtaagaagagcatcaaac
tctagaagccgaagacttatgatggctaaaaatgaggcagaaatgtcagttggagttaag
gtgatcgccgacttggagaggcttaaagtaacattagagaaggaaaccggtaaggtaccg
accttaagatgctgggcagaagcagctggagttgatgaaaaggtgctgcaacaacaactg
catttcggctggtactgccaagatgagcttgtaaggagcactcggtccttagttctgtac
cttgctcgaaattatagaggacttggagtagccttagatgatttgttacaggctggaaac
ctgggtctcctacagggtgctgaaaggtttgatccctcacggggttacagattctcaacc
tatgtccaatactggataagaaaatcaatgtcaagattggtggcacaacatgccagaggg
atcaaaattcctaacacgcttagtaaggcaataaatcggatacagaaggctcgaaaagcc
aattacaacagccacatgaaatacccagatgatgaagaaatagcaaagattacaggtctt
tctttggcgaaaatcagctcggctagcagatgtcttagagttgtgggttcggtagatcat
aagatatgggaatgctcggccgggacatatatggaatttactccggatatagcagtagag
actcctgaagaatctgtcatgcggcagcacatgaaaaacgatattcatgttctgctggaa
ggcttgaattcaagagaaaagaaagttttggcactacgatatggtctaaactactgcaac
cccaagtcacttgaggagatcggaaggcttttccatgtgagcaaggagtggatacgaaag
atagaaaagaatgctctgaccaagctgaggaatgaagaaagcaacaaaaacttgagccat
tatttgaagcagtggtaa
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