Fragaria vesca (woodland strawberry): 101292339
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Entry
101292339 CDS
T02666
Name
(RefSeq) cyclic nucleotide-gated ion channel 1-like
KO
K05391
cyclic nucleotide gated channel, plant
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
101292339
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
fve04040
]
101292339
Ion channels [BR:
fve04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
101292339
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GFIT
Motif
Pfam:
Ion_trans
cNMP_binding
Ion_trans_2
Motif
Other DBs
NCBI-GeneID:
101292339
NCBI-ProteinID:
XP_004306680
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Position
LG7:complement(3732344..3736003)
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AA seq
719 aa
AA seq
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MNLKGTKFVRFDDWRSERSTSSEREFSTDDGRNRRRPRPSLNAVLSSIRRGFDRGSDRFK
TLRKPLSPSKQQAKEPGPRKNILDPQGSFLQTWNKIFVISCVIAVSLDPLFLYTSVVDGK
NKCLGLDKELQIVACVLRSFTDVFHILHIIFQFRTGFIAPSSRVFGRGELNDDPVAIAKR
YLSSYFIIDVLAILPLPQVVVFLIVPIIERPVPMTAKNLLTIVIVCQYVPRLIRIYPLYK
EVTKTSGFLTETAWAAAAFNLLLYMLASHVVGAIWYLFSVEREYRCWHDHCGNDVNCKNY
LYCGGSDKVANMTIVDMLKDSCPFTNPDDIKNSSVFNFGIFAEALESGVMETTDFPMKFL
YCFWWGLRSLSSLGQNLKTSTYVWEILFAVFISIFGLVLFALLIGNMQKFLQSTTVRVEE
MRVKRRDAEQWMSHRMLPEKLRERIRRYDQYKWQETRGVEEDELVRNLPKDLRKDIKRHL
CLALVKRVPMFEKMDDRLMDALCDHLKPVLFTDDSFIIREGDPVDEMLFVMRGNIATMTT
NGGRTGFFNCANLKAGDFCGEELLTWALDPKSTTNLPISTRTVEAITEVEAFALRADDLK
FVASQFRRLHSRQVQHAFRFYSMQWRTWASCFIQAAWRRHCKRKLEKSLHEAEEKLHDAF
ASDAGNTPSLVATVYASRFAANALRALRQKGVRDSRPLPALLPLLPQKPAEPDFTEEQE
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgaaggggactaagtttgtaaggtttgatgattggcgttcagagagatctaca
agttctgagagggaattttcgactgatgatggacgaaatcgaagaagacctaggccatct
ttgaatgcagtattaagtagcattcgtagaggatttgataggggttcagataggtttaaa
accttgagaaaacctttaagtcccagtaagcagcaagcaaaggagccaggccctaggaag
aacattctcgaccctcagggatcatttcttcagacatggaataagatatttgtgatatct
tgtgtcatagctgtgtcattggatccattgtttctttatacatcagtggtcgatgggaag
aataaatgccttggtttggacaaagagctgcagattgttgcttgtgttcttcgttcattc
accgatgtttttcatatacttcatataatctttcagtttcgaactggatttattgcacca
tcttctagggtattcggaaggggtgagctaaatgatgaccctgtggccattgcaaaaaga
tacttgtcttcatactttatcatagatgttctagctattcttcctctaccacaggttgta
gtttttttgatagtccctataatagaacgtccagttccaatgactgcaaagaacttattg
acaattgtgattgtatgccaatatgtgccaagacttatacgaatctatccgctatacaaa
gaagttacaaaaacttccggtttcctgactgagacagcatgggctgcagctgcattcaat
cttttgctctacatgttagccagccatgtagttggagcaatatggtacttgttctctgta
gaacgagagtataggtgctggcatgatcattgcggaaatgatgtaaattgtaagaactac
ctgtactgtgggggttctgacaaggtagctaacatgacaattgttgacatgttaaaagat
tcttgcccttttaccaaccctgatgacattaaaaattcatctgtgttcaactttggaata
tttgctgaagctctggagtctggtgtgatggagacaacagattttccaatgaaattttta
tactgtttctggtggggtctgcgtagccttagttctcttggtcaaaacctcaaaacaagc
acttatgtttgggagatactctttgcggtcttcatttctatcttcggactggtcctattt
gcattgctcatcggcaatatgcagaaatttctgcagtcaactactgtgagagttgaagaa
atgagagtgaaaaggcgagatgcagaacagtggatgtcgcaccgaatgcttcctgagaaa
ttgagggaaaggatcagacgctatgatcagtataaatggcaagaaacaagaggtgttgag
gaagatgaactagttcgtaaccttcctaaagacctgaggaaggacataaaacgccatctt
tgcttggctcttgttaagagagtgccgatgtttgagaaaatggatgaccgactgatggat
gccctgtgtgaccatctcaagccagtccttttcacagacgacagcttcattatccgagag
ggtgacccagttgatgagatgctttttgttatgcgtggaaacatagcaactatgactact
aatggtggaaggactggcttctttaactgtgctaatcttaaggctggtgacttttgtgga
gaagaacttcttacatgggcattggatccaaagtccactaccaatctcccaatctcaact
agaacagtggaagctataactgaggttgaagcatttgctctgagggcagatgatttgaag
tttgtcgcctcccagtttcggcgcctgcacagtaggcaggtccaacatgctttcaggttc
tactccatgcagtggaggacatgggcatcctgtttcatacaagcagcttggcgccgacac
tgcaagagaaagcttgagaagtcattacatgaagcagaagagaaactgcatgatgctttt
gcaagtgatgctggaaacacaccaagccttgttgccaccgtatatgcatcaaggtttgca
gccaatgcactacgtgccttgcgacagaagggtgtgcgtgactctagacctttaccggca
ttgcttccactgctacctcagaagcccgcagagcctgattttactgaagaacaggagtga
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