Fragaria vesca (woodland strawberry): 101293001
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Entry
101293001 CDS
T02666
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
fve
Fragaria vesca (woodland strawberry)
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fve03016
]
101293001
Enzymes [BR:
fve01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
101293001
Transfer RNA biogenesis [BR:
fve03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
101293001
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
TraT
PMSI1
DUF6447
Motif
Other DBs
NCBI-GeneID:
101293001
NCBI-ProteinID:
XP_004299881
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Position
LG5:complement(15609951..15618407)
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AA seq
671 aa
AA seq
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MRPRPSFPPYTNYKRKFTEAVAVCLKTQNSKSGSSSMEDIEDLFVGAGAGGGAPPGFRLP
ITSVGLNPKKNKKKPNLNGNSNSNGLSQIKHPLAPLSPKVPGSETIYIKTFGCSHNQSDS
EYMAGQLSAFGYSLSDNPEDADLWLINTCTVKSPSQSAMDTLIAKGKGAKKPLVVAGCVP
QGSRDIKELDGVSIVGVQQIDRVVEIVEETLKGHEVRLLSRKTLPALDLPKVRKNKFVEI
LPINVGCLGACTYCKTKHARGHLGSYTVDGLVGRVRSVIADGVREIWLSSEDTGAYGRDI
GVNLPILLNAIVKELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSG
SDAVLTAMNREYTVSEFKTVVDTLTELVPGMQIATDIICGFPGETDENFAQTHDLIKEYK
FPQLHISQFYPRPGTPAARMKKVPSTVVKNRSRELTSVFEAFTPYVGMEGRVERIWITEV
ATDGTHLVGHTKGYVQVLVAGPEIMLGTSAIAKITSVGRWSVFGEVIETIPEMNDRAAVG
KEMQSRESSFPCSNNFETCACSTEPENCACGPGSCGEQATSTKCYVTTTGVPLEEQKNRN
LIGWLLRKRKNQVQKFVENEIDLGSKEKREQAQESIGKWGAVDKALLGGMLASFLTIVAV
LVHLGFRILSN
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgaggccaagaccgtcttttccgccctacacaaattataagagaaaatttactgaagca
gtagcagtgtgtctaaaaactcaaaactcaaaaagcggaagctcgagcatggaggacatt
gaggatttgttcgtcggtgccggagcaggcggcggagctcctccgggcttccgtctgccg
attacatccgtcggactcaatccaaagaagaacaagaagaagcccaatctcaacggcaac
agcaacagcaacggcctctctcaaatcaagcaccctctcgctcctctctcccctaaagtc
cccggaagtgagactatatatatcaagacatttggatgctcccacaaccagagtgacagc
gaatatatggctggtcaactttcagcttttggttattcattaagtgacaatcctgaggat
gcagacctgtggctcataaatacatgcacagtcaaatctccaagccaatctgccatggac
actctgatagcaaaaggcaaaggtgcaaaaaagcccctggtggtagctgggtgtgtgcct
caaggaagtcgagatataaaggagctagatggtgtcagtatagtaggagtccagcaaatt
gaccgtgtggttgaaattgttgaagagaccttgaaaggtcacgaggtgcggcttttaagc
cgtaaaacgttgccagcactggacctccctaaggtgagaaaaaacaagttcgttgagatt
cttcccattaatgttggctgtttaggtgcttgcacatactgcaaaacgaagcatgcccgt
ggtcatttagggagttacactgttgatggacttgtaggacgtgtaagatctgtgatagct
gatggagtcagggaaatatggttgagtagtgaagatactggagcatatggtcgtgacatt
ggtgtcaatctacctattttgttaaatgcaattgtcaaggagcttcctcctgatggaagc
acaatgcttcgaattggaatgacgaatcctcctttcattttagagcacttgaaagaaatt
gcagaggtgttgaggcatccatgtgtatactcatttctccatgtaccagtccaatctgga
agtgacgctgtcttgactgcaatgaatcgagaatatactgtgagtgagttcaagactgtt
gtagataccctaactgagcttgtgccagggatgcagattgcaactgatataatttgtgga
tttcccggtgaaacggatgaaaattttgctcaaacgcatgaccttattaaggagtacaag
tttcctcaacttcatatttcacagttctatcctcgacctggaacacctgctgcaaggatg
aaaaaggtccccagtactgtagtgaagaataggagtcgtgaattgacttctgtttttgaa
gctttcaccccatatgttggaatggagggcagggtggaaaggatttggataacagaagtt
gccactgatggtactcacttggttggtcataccaagggatacgtacaagtgcttgtagct
ggtccagaaattatgctggggacttcagctattgcgaagatcacttcagttggaaggtgg
tcagtatttggagaagttattgagactatccctgaaatgaatgatagagcagctgtagga
aaggaaatgcagagtcgggagagtagtttcccctgctcaaacaattttgagacttgtgct
tgttcaacagagcctgaaaattgtgcttgtggaccaggaagttgtggagaacaggctaca
tcgacaaagtgttatgtaacaactactggcgttccacttgaagaacagaagaacagaaat
cttattggatggttactaaggaaacgaaagaaccaagttcagaaattcgtggagaatgaa
attgacttgggatctaaggaaaagcgagagcaggcccaagaaagcatcggtaaatggggt
gctgtggacaaggctcttcttggtgggatgcttgcgagcttcctgactattgtagctgta
ctagtacatctaggatttagaattttgtcaaattaa
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