Fragaria vesca (woodland strawberry): 101293182
Help
Entry
101293182 CDS
T02666
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101293182
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fve03019
]
101293182
Messenger RNA biogenesis [BR:
fve03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101293182
mRNA degradation factors
5'-3' decay
Decapping complex
101293182
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
Beta-prop_WDR3_1st
WD40
Beta-prop_WDR5
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_1st
Beta-prop_THOC3
PEP5_VPS11_N
WDR55
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_2nd
WD40_Prp19
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_EML_2
RAP1
MRP-S27
Motif
Other DBs
NCBI-GeneID:
101293182
NCBI-ProteinID:
XP_004296126
LinkDB
All DBs
Position
LG3:complement(22670285..22677197)
Genome browser
AA seq
1381 aa
AA seq
DB search
MASPGNPNTPPPSPHQQQQPPFDMAKFFKPTTSPQTHPPQNPNPNLNSAAFPIPPSSYPP
PSGPYSYPPQTAPFHQNQFHYPQPQIPYPPQDHHLLQQQQRSLSFPIPPLQPPGNYNIAT
AASNPAASGNPNSGARIMALLGAPSSGVEMPPQQPEMSAPGMVPVLPMGIPPSPSRMPSN
KLPKGRHLIGDSVVYDVDVRLPGEFQPQLEVTPITKYGSDPQLVLGRQIAVNKSYICYGL
KQGNIRVLNIHTALRSLFRAHTQRVTDMAFFTEDVHLLASVSVEGRLFVWKISEGPDEEG
TPQITGKIVVAIQIVGEGEAVHPRVCWHCFKQEVLVVGVGKRVLRIDTTKVAKGEVPSAE
DPIKCPVEKLIDGVQFVGRHDGEVTDLSMCQWMTTRLVSASMDGTIKIWEDRKSQPLLVL
RPYDGLPVYSSIFVTAPNKPDHIILVTVGPLNREVKIWSSASEEGWLLPSDAESWKCTQT
LELKSSAQPRVEDAFFNQVIALSQAGLLLLANAKKNAIYAVHIDFGGEPAATRMDYIAEF
TVTMPILSFTGTSISPHGEQIVQVYCVQTQAIQQYALDLSKCLPPPLENSGLEKTDSTVS
HDAIEALSANSAPKPTIQATTPEGAAASRYPLRTGSVDAATSKDITTSSIESKPVASAPE
MNDADVFVATEPPPLSPRLSGKLSGLRSPTDSTHSGDQQINEYSVDRHMNTARSNLSDTP
AVADDSRNDEQKIVQDEVSSVLNPPIMFKHPTHLITPSEILMAASSSENTNAVDSNTDGD
AKVQDVLVNSDVVNPEVEVKVVGESRSTQIDEFGSQRELQNAVSENKEKYFCSQASDLGI
EMARDCCAISSESFITEEARQGDGASMSAPLAQPHSGEEDQDQSAKDVSGSSAATTTSQL
QTPNAKSRKQKWKNMQASGPSSPSLGVLNSVESSNEAGGSSSGEAEVPQIMAMQDMMNQL
MNMQRELQKQMTMMVTKEGKRLEVAMGRSMEKAVKANNDALWARFQEESSKKDAQLARLQ
EEISKSEKLSRERSQQVTGVINNFVNKDFPVMLKKEIAAAGPAVGRAITPSIEKTIPLAI
SDCFQRGVGDKAVNQLEKSVNSKLEATVSRQIQTQFQTSGKQAIQDALKSSMEASVVPAF
EKSCRAMFEQVDATFQKGMLEHTTAAQQHFESAHSPLAHALREAISSASSVTQTLSGELA
DGQRKLVALAAGRGNSSAVNPIVTQLTNGPLGGLHEKVEVPLDPTKELSRLVTERKYEEA
FTGALQRSDVGIVSWLCAQVNLQSILLLQPVPLSQGVLLSLLQQLACDINNDTPRKLAWM
TDVATAINPSNQMIAMHVRPIFEQVYQILHHQHSLPTLSSVEQHSLRLLMHVINSMMMAC
K
NT seq
4146 nt
NT seq
+upstream
nt +downstream
nt
atggcctcccccggcaaccctaatactcctccaccttcgccgcaccagcaacaacagccc
cctttcgacatggccaagttctttaaacccaccacttccccccaaacccatcccccacaa
aaccctaaccctaatctcaactccgccgccttccctatccctccttcctcctatcctccc
ccttctgggccctactcctaccctccccaaacggcgccgtttcaccagaaccaattccat
taccctcagccccaaattccttaccctcctcaagaccaccatctcctccagcagcagcag
cgctccctctccttccccatcccgcccctccagcctcccggtaattacaacattgccacc
gccgcctccaaccccgccgcctccggaaaccccaattccggcgccaggatcatggccctg
ctcggcgcgccgtcttccggcgtcgaaatgccgccgcagcagccggagatgtcggccccc
gggatggtgcccgttcttcccatggggatcccgccgtcgccgtctcgaatgccgagcaat
aagctgccgaaagggaggcatttgatcggagatagtgtggtttacgatgtggatgttagg
ctgcccggggagtttcagccgcagctggaagttacgccgattacgaagtatggttcggat
cctcagctggttttgggcagacaaattgcagtgaataagtcgtatatatgctatggattg
aagcaagggaatattagggttttgaatatacacactgcgttaagatctttgtttcgagct
catacacagagggtcacagacatggctttcttcactgaggatgttcaccttttggctagt
gtgagtgtagaaggacggctttttgtgtggaaaatttctgaaggtccggatgaagaaggt
acgccacaaatcacaggaaagattgttgttgccattcaaatagttggtgagggggaagct
gttcatccacgagtttgttggcactgttttaaacaagaggttttggtggttggggttggg
aagcgtgttctacgaattgatactactaaagttgcaaagggtgaagtcccttctgctgag
gatcctatcaaatgtcctgttgaaaagcttattgatggggtccagtttgttggtagacat
gatggagaggtgacagatttatcaatgtgccaatggatgaccacccgactggtttctgct
tctatggatggaacaataaagatctgggaagatcgcaagtcacaaccacttttagtactg
agaccctatgatggccttcctgtttattcgtctatatttgtgacagctcccaacaaacca
gatcacatcatacttgtaacagtgggtcccctaaatcgggaagtgaagatctggtcctca
gcaagtgaagaaggctggctgcttcctagtgatgctgagtcatggaaatgtacccagacc
ttagagctaaagagctctgctcaacctcgagttgaggatgcattctttaatcaagtcata
gcattgtcacaagctggccttcttttacttgcaaatgctaagaagaatgccatatatgct
gtgcacatagactttggtggtgagccagcagctacacgcatggattacatagcagaattt
actgttacaatgcctattttgagctttacggggacaagtatatctcctcatggtgaacaa
atcgttcaggtttattgtgtccaaacacaagccattcaacagtatgctttggacttatcg
aagtgcttacctcccccgctggagaattcaggtttagaaaagacagattccactgtttca
catgatgcaattgaggcgctgtcagctaattcagcaccgaaaccaaccatccaagctact
actcctgaaggtgcagctgcctcgaggtatcctctgcgcactggttcggttgatgctgcc
acttcgaaagatattaccacttcttctatagaatcaaaacctgttgcatcggcaccggag
atgaatgacgcagatgtttttgtagcaacagaacctcctcctttgagtcctcggttgtcc
gggaaactgtctggtttaagaagcccgacagatagcacccatagtggtgaccaacaaatt
aatgagtactcggttgacaggcatatgaatactgctcgttcgaacttgtctgatacgcct
gcagttgctgatgattcaaggaatgatgagcagaaaattgtacaagatgaagtgtctagt
gtgcttaatcctcctatcatgttcaaacatccaacccatctgataactccctctgagatt
ttaatggctgcttcttcatctgaaaatacaaatgcagttgacagcaacactgatggggat
gcaaaagtccaagatgtgcttgttaacagtgatgtggttaatcctgaggtagaagtcaaa
gttgtcggtgaatcaagatctactcaaattgatgaatttggctcccaacgagaactccaa
aatgctgtttcagagaataaggagaagtacttttgctcccaggcatcagatcttggaatt
gaaatggcccgggattgctgtgcaatatcatcagaatcatttataacagaggaagctcgg
caaggtgatggtgccagcatgtctgcaccacttgctcagcctcattccggagaggaggat
caggaccagtccgcaaaagatgtatctgggtcgtctgccgccacaaccacgtcgcaacta
caaacaccaaatgcaaagtcgagaaaacagaaatggaaaaatatgcaagcatcaggtcca
tcttccccatcactaggtgtgctcaactcagtagagtcctccaatgaagcaggcgggagt
tcaagtggagaagctgaagttcctcaaattatggccatgcaggatatgatgaatcagcta
atgaatatgcaaagagaattgcaaaaacagatgacaatgatggttacaaaggaaggaaaa
agattagaggtggctatgggtcggagtatggagaaggctgtaaaggccaataatgatgct
ctgtgggctcggtttcaagaagagagttcaaaaaaagatgctcagttggctcggcttcaa
gaagagatttcaaagagtgagaaattatcgcgagaacgtagtcaacaagtaactggtgtg
atcaataactttgtaaacaaggactttccagtcatgttgaaaaaagaaatagctgctgct
ggaccagctgtcggccgtgcaatcactccatctatagagaaaacaatacctttggctata
tctgattgctttcagagaggagtgggcgataaagcagttaatcaattggagaaatcggtc
aactcaaaacttgaagctactgtatccaggcaaatccagacgcagtttcaaacttcgggt
aaacaagctattcaggatgctctcaagtctagcatggaagcttcagtggtacctgccttt
gagaagtcatgtagagccatgtttgagcaagtagatgctacattccagaaaggaatgctt
gaacatacaactgccgctcagcagcattttgagtctgcacattcaccattggcccatgct
ttaagggaagctattagctccgcatcatcagtgactcaaaccctaagcggagaactggct
gatggccaacgcaagttagtggctcttgcagctggacggggaaactcaagtgctgtgaat
cccatagtcactcaactaaccaatggacccttgggtggtctccacgagaaggttgaagtg
cctttggatccaacaaaggagctgtcaaggttggtgactgaacgcaagtatgaagaggct
tttacaggtgctctgcaaagaagtgatgtcggcattgtatcatggttgtgtgctcaggtt
aatcttcaaagcatattgttgctgcaacctgttcctctgagccagggagtacttctatct
ctcttgcaacagcttgcctgtgatatcaacaatgatacacctcgtaaacttgcatggatg
acagatgtggcaaccgccataaacccaagcaaccagatgattgcaatgcatgtaagaccc
atctttgagcaagtttatcagatactgcaccatcaacatagcttgcctacactctccagt
gtcgagcaacatagtcttcgtcttctcatgcatgtcattaactccatgatgatggcctgt
aaatga
DBGET
integrated database retrieval system
