Fragaria vesca (woodland strawberry): 101293426
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Entry
101293426 CDS
T02666
Name
(RefSeq) vacuolar protein sorting-associated protein 35A
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
101293426
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
fve04131
]
101293426
Membrane trafficking [BR:
fve04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
101293426
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
Motif
Other DBs
NCBI-GeneID:
101293426
NCBI-ProteinID:
XP_004287790
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Position
LG1:8340905..8347517
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AA seq
793 aa
AA seq
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MISDGVEDEEKYLAAGIAGLQQNAFYMHRALDSNNLRDALKYSAQMLSELRTSKLSPHKY
YELYMRAFDELRKLEMFFKEEARRGCSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKE
APAKDVLKDLVEMSRGIQNPVRGLFLRSYLSQVSRDKLPDIGSEYEGDADTVRDAVEFVL
QNFTEMNKLWVRMQHQGSAREKEKREKERSELRDLVGKNLHVLSQIEGVDLDLYKETVLP
RVLEQIVNCKDELAQFYLMDCIIQVFPDEYHLQTLDILLGACPQLQPSVDIKTVLSQLME
RLSNYAASSIEVLPEFLQVEAFSRLSNAIGKVIEAHVDMPVIGVVTLYSSLLKFTLHVHP
DRLDYADQVLGSFVKKLSGKGKIEDSRATKQVVALLSAPLEKYNDIVTALKLTNYPRVME
FLDTGTNKVMATVIIQSIMKNTTHILTAEKVEALFELIKGLIVDLDGTLHDEVDEEDFKE
EQNSVARLIQMFHNEDPEEMFKIICTVRKHIMSGGPKRLPFTVPPLVFSSLKLVRQLHGG
HEDRENPFGEEASTTPKKIFQLLTQTIEALLNVPAPELALRLYLQCAEAANDCDLEPVAY
EFFTQAYILYEEEISDSKAQVTAIHLIIGTLQRMQVFGVENRDTLTHKATGYSAKLLKKP
DQCRAVYACSHLFWVDDQENMKDGERVLICLKRALRIANAAQQQANATRGSTGSATLFVE
ILNKYLYFFEKGNPQITVASVQSLIELITTEMQSDSTPAEPATNAFFASTMRYIQFQKQK
GGAVGEKYEQIKV
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
atgatctccgacggagttgaagacgaagagaagtacctcgccgccggaatcgccggcctt
caacagaatgccttctacatgcatcgcgctctggactcgaacaatctcagagacgcgctc
aagtactcggctcagatgctatcggagctccggacctcgaagctctcgcctcacaagtac
tacgagctctatatgcgagcttttgacgaattgaggaaattggagatgttcttcaaggag
gaggcgcggcgcggttgctctattattgatctgtatgagcttgtgcagcatgctggcaac
attttgcccagattatatctactatgtacagtaggatctgtttatatcaaatctaaggaa
gcacctgctaaggatgtcctgaaagatcttgtggaaatgtcacgtggtattcagaatcct
gtacgtgggctcttcttaaggagctacctttctcaagtcagtagggataagttgcctgat
atcgggtcggagtatgaaggggatgcagatactgtcagggatgctgttgagtttgttctc
caaaatttcaccgagatgaacaagctttgggtgcggatgcaacatcaggggtctgctagg
gaaaaggagaagcgggagaaagaaaggagcgagctgcgcgatcttgttggtaaaaacctg
catgttctcagccagatagaaggtgttgatctggatttgtacaaagagaccgtgcttccc
agagtcctggagcagattgtcaattgtaaagacgagcttgcacagttttatttgatggat
tgcataattcaagtctttcctgatgagtaccacttgcaaactcttgatattttgttgggt
gcttgcccccaacttcagccatctgttgatatcaagacagtgctatcccagttaatggaa
aggctttccaactatgctgcatcaagcatagaagtgttgcctgagtttttacaagtagaa
gctttttctagactgagcaatgcgataggaaaggtgattgaagcacacgttgacatgcct
gtaattggtgttgttactttgtactcatcccttcttaagttcactctgcatgtgcatccg
gatcgacttgattatgctgatcaagtgttggggtcatttgttaagaagctctcaggaaaa
ggaaaaattgaagacagcagggcaacaaaacaagttgttgcacttttaagtgctcctttg
gagaaatataatgatattgtgactgctttgaagcttacaaattatccccgtgtcatggaa
ttccttgatactggaacgaataaagtcatggcaactgtcataatacaaagcattatgaaa
aatacaactcatattttaactgctgagaaggtcgaggcattgtttgaattaataaaagga
cttatcgtggatttggatgggactcttcatgatgaggttgatgaagaggatttcaaagag
gagcagaattctgttgcaagacttattcaaatgttccataatgaagatccagaagagatg
tttaagatcatatgtactgtgcggaagcacatcatgtctggaggaccaaagcggctaccc
tttactgtccctcccctagtcttttcttctctaaagttggtcaggcaattgcatggagga
catgaagatagagaaaatccttttggagaagaagcgtccactacaccaaagaaaattttt
cagctcttgactcagactattgaggctcttttgaatgtgccagctcctgagctagcatta
cggctgtacttgcaatgtgctgaggctgcaaatgattgtgatttagaacctgttgcgtac
gaattcttcacccaagcttatattctgtacgaagaagaaatttcggattcgaaagcacag
gtgactgcaattcatttgataattgggaccctccagaggatgcaagtatttggtgttgag
aacagagatactttaactcacaaggccacagggtattcagcaaagcttttgaagaagcct
gatcagtgccgagctgtttatgcttgctcacatcttttctgggttgacgatcaagagaac
atgaaagatggggaaagggtactgatttgcctaaagagagctttaaggattgcaaatgct
gcccagcagcaggccaatgcaacacgtggtagcacgggttcagcaacactctttgttgaa
atactgaacaagtacctttatttctttgagaagggcaacccacagataactgttgcttct
gtacaaagcctgattgaattgattactactgaaatgcaaagtgactcaactccagcagaa
ccagctacaaatgcattctttgccagcacgatgcggtacattcaattccaaaagcagaaa
ggcggcgcagttggtgaaaaatatgagcaaatcaaggtgtga
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