KEGG   Fragaria vesca (woodland strawberry): 101293489
Entry
101293489         CDS       T02666                                 
Name
(RefSeq) DNA mismatch repair protein MSH2
  KO
K08735  DNA mismatch repair protein MSH2
Organism
fve  Fragaria vesca (woodland strawberry)
Pathway
fve03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:fve00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    101293489
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:fve03400]
    101293489
DNA repair and recombination proteins [BR:fve03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    Mismatch and loop recognition factors
     101293489
SSDB
Motif
Pfam: MutS_V MutS_III MutS_IV MutS_I MutS_II DUF2465
Other DBs
NCBI-GeneID: 101293489
NCBI-ProteinID: XP_004299238
LinkDB
Position
LG5:complement(6983291..6989231)
AA seq 942 aa
MDPNFEDQSKLPELKLDAKQSQGFLSFFKTLSHDPRAIRLFDRRDYYTAHGENATFIAKT
YYRTTTALRQLGNGSDSLSSVSVSKNMFETIARDLLLERTDHTLEIYEGSGSSWRLVKSG
TPGNLGSFEDILFANNEMQDTPVVVALLPNFRENGCTVGLGYVDLTKRSLGIAEFLDDSH
FTNLESALVALGCKECLLPIESGKTGEIRALHDALTRCGVMLTERKKSEFKMRDLVQDLS
RLVKGSIEPVRDLVSGFEFAPGALGALLSYAELLADESNYGNYNIQRYNLDNYMRLDSAA
MRALNILESKTDANKNFSLFGLLNRTCTAGMGKRLLHMWLKQPLLDVEEINSRLDLVQAF
VEDPALRQDLRQHLKRISDIERLVHNLEKKRAGLQHVVKLYQSCIRLPYIKSALERYDGE
FSSLIKEKYLDPLELWTDDGHLNKFLALVEAAVDLDQLENGEYLIASSYDSALSALKNEQ
ESLAQQIHNLHKQTAKDLDLSIDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLE
TRKDGVKFTNTKLKKLGDQYQRILEEYKSCQKELVSRVVHTVSTFSEVFCSVAGALSELD
VLLSFADLASSCPTPYTRPHITPSDVGDIILEGSRHPCVEAQDWVNFIPNDCKLVRGKSW
FQIITGPNMGGKSTFIRQVGVIILMAQVGSFVPCEKASISIRDCIFARVGAGDCQLRGVS
TFMQEMLETASILKGSTDKSLIIIDELGRGTSTYDGFGLAWAICEHLVEVINAPTLFATH
FHELTALAQENAVHEPNMKQVAGVANYHVSAHIDSSSRKLTMLYKVEPGACDQSFGIQVA
EFANFPESVVSLAREKAAELEDFSPTAIIPNDPREEVGSKRKREYDSDDMSRGAALARKF
LKEFSEMPLDTMDVQQALQIVNKMKDDLQTEAVNSQWLQQFF
NT seq 2829 nt   +upstreamnt  +downstreamnt
atggatcccaatttcgaggaccagagcaagcttccggagcttaaattagatgccaagcaa
tctcaagggtttctgtcattcttcaaaaccctctcccatgacccaagagctatccggttg
tttgatcgtcgggactactatactgctcatggtgaaaatgctactttcattgcaaagacc
tattatcgtaccaccactgctctccgacaactgggtaatggatctgatagcctttccagt
gtgagtgttagtaaaaacatgtttgaaacaattgcccgtgatcttctactggaaagaaca
gatcatactcttgagatttatgagggtagtggctcgagttggagactagtgaaaagtgga
acgcctggaaatcttggaagttttgaagacattttatttgcaaacaatgagatgcaggat
accccagtggttgttgcactgttacccaacttccgtgaaaatggttgcacagtggggtta
ggatatgttgatctaactaaacggtctcttgggatagctgaatttcttgatgatagccac
tttacaaatttggaatcagctttagttgcacttggttgcaaggaatgccttttgcccata
gagagtggaaaaactggtgaaatcagagctttacatgatgcattgactcgatgtggtgtg
atgttaactgagaggaaaaagagtgaatttaagatgagggatttggttcaggatctcagt
cggcttgtcaaaggatctattgaaccagttcgagatttagtttctggatttgagtttgcg
cctggtgcattgggggcattactctcttatgcagaactacttgctgatgagagtaattat
ggaaactataacatccaaagatataaccttgataactatatgaggttggattctgctgct
atgagggcacttaatatcctggaaagcaaaactgatgcaaacaaaaatttcagcttattt
ggtcttttgaacagaacctgtactgctggaatgggtaaacgattactgcacatgtggcta
aaacagcctttattagatgtggaggaaatcaattccaggttagatttggtacaagcattt
gtggaggatcctgcacttcgccaagatttgaggcagcatctgaaacgtatctcagacatc
gaacgactggtgcacaatctggaaaagaaaagagctggtttgcagcatgttgttaagctt
tatcagtcatgtataaggcttccatacatcaaaagtgcgttagagcgatatgatggagag
ttttcctctctgatcaaggaaaaatatttggatccccttgaattgtggactgatgatggc
cacttaaataagttccttgctctagtggaagctgctgttgaccttgatcaactcgagaat
ggagagtacttgatagcatctagttatgattctgctctttctgcactaaagaatgagcaa
gagtcgctggctcagcagatacacaatttgcataaacaaactgctaaggatcttgatctc
tctatagataaggcattaaagttagacaaaggcacacaattcggacatgtcttcagaatc
acaaagaaggaagagccaaaaataaggaaaaagcttacaacacaattcattgtcctggaa
acccgaaaagatggagtgaaatttactaataccaagcttaaaaagttgggggatcaatat
cagagaatactggaagagtacaaaagttgtcagaaagaactggtcagccgagttgttcac
actgtatctactttctcagaggtgttctgttctgtagctggcgcgctttctgaattggac
gtcttacttagttttgctgatttggcttctagttgtcctactccttatactaggccacac
atcactccatcggacgtgggggatatcatactagaagggagtagacatccttgtgtggag
gctcaggactgggtcaattttatacctaatgattgtaaacttgtaagaggaaagagttgg
ttccaaatcattacagggcctaatatgggtggaaaatccacatttatccggcaggttggt
gtgattattctaatggcacaagttggttcttttgttccttgtgagaaagctagcatttct
attcgtgattgcatttttgctcgagtgggtgctggtgattgccaactacgtggagtctct
acctttatgcaagaaatgcttgagactgcatctatactgaaaggatctacagataagtca
ctgataatcattgatgagttaggccgagggacatcaacttatgatggatttggtttggct
tgggccatttgtgagcaccttgttgaagtgataaatgcaccgactttgtttgcgacccac
tttcatgaattgaccgcattagctcaagaaaatgctgttcatgagcctaatatgaagcaa
gttgctggtgttgcaaactatcatgttagtgcacatattgactcgtcaagccgcaagttg
actatgctgtacaaggtcgagccaggggcatgtgatcaaagttttggtatccaggttgca
gaatttgcaaactttcctgaaagtgttgtctcccttgctagagaaaaggctgctgaattg
gaggatttctctcctactgctatcattccaaatgatcctagagaagaggttggttccaag
cgcaagagagaatatgattctgatgacatgtccagaggagctgctcttgcgcgcaagttt
ctaaaggagttctctgaaatgccattagatacaatggatgtacagcaggctttgcaaata
gttaacaagatgaaggatgacttgcaaacggaggcagtaaacagccaatggctacaacag
tttttctag

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