Fragaria vesca (woodland strawberry): 101293489
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Entry
101293489 CDS
T02666
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
101293489
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fve03400
]
101293489
DNA repair and recombination proteins [BR:
fve03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
101293489
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
DUF2465
Motif
Other DBs
NCBI-GeneID:
101293489
NCBI-ProteinID:
XP_004299238
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Position
LG5:complement(6983291..6989231)
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AA seq
942 aa
AA seq
DB search
MDPNFEDQSKLPELKLDAKQSQGFLSFFKTLSHDPRAIRLFDRRDYYTAHGENATFIAKT
YYRTTTALRQLGNGSDSLSSVSVSKNMFETIARDLLLERTDHTLEIYEGSGSSWRLVKSG
TPGNLGSFEDILFANNEMQDTPVVVALLPNFRENGCTVGLGYVDLTKRSLGIAEFLDDSH
FTNLESALVALGCKECLLPIESGKTGEIRALHDALTRCGVMLTERKKSEFKMRDLVQDLS
RLVKGSIEPVRDLVSGFEFAPGALGALLSYAELLADESNYGNYNIQRYNLDNYMRLDSAA
MRALNILESKTDANKNFSLFGLLNRTCTAGMGKRLLHMWLKQPLLDVEEINSRLDLVQAF
VEDPALRQDLRQHLKRISDIERLVHNLEKKRAGLQHVVKLYQSCIRLPYIKSALERYDGE
FSSLIKEKYLDPLELWTDDGHLNKFLALVEAAVDLDQLENGEYLIASSYDSALSALKNEQ
ESLAQQIHNLHKQTAKDLDLSIDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLE
TRKDGVKFTNTKLKKLGDQYQRILEEYKSCQKELVSRVVHTVSTFSEVFCSVAGALSELD
VLLSFADLASSCPTPYTRPHITPSDVGDIILEGSRHPCVEAQDWVNFIPNDCKLVRGKSW
FQIITGPNMGGKSTFIRQVGVIILMAQVGSFVPCEKASISIRDCIFARVGAGDCQLRGVS
TFMQEMLETASILKGSTDKSLIIIDELGRGTSTYDGFGLAWAICEHLVEVINAPTLFATH
FHELTALAQENAVHEPNMKQVAGVANYHVSAHIDSSSRKLTMLYKVEPGACDQSFGIQVA
EFANFPESVVSLAREKAAELEDFSPTAIIPNDPREEVGSKRKREYDSDDMSRGAALARKF
LKEFSEMPLDTMDVQQALQIVNKMKDDLQTEAVNSQWLQQFF
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggatcccaatttcgaggaccagagcaagcttccggagcttaaattagatgccaagcaa
tctcaagggtttctgtcattcttcaaaaccctctcccatgacccaagagctatccggttg
tttgatcgtcgggactactatactgctcatggtgaaaatgctactttcattgcaaagacc
tattatcgtaccaccactgctctccgacaactgggtaatggatctgatagcctttccagt
gtgagtgttagtaaaaacatgtttgaaacaattgcccgtgatcttctactggaaagaaca
gatcatactcttgagatttatgagggtagtggctcgagttggagactagtgaaaagtgga
acgcctggaaatcttggaagttttgaagacattttatttgcaaacaatgagatgcaggat
accccagtggttgttgcactgttacccaacttccgtgaaaatggttgcacagtggggtta
ggatatgttgatctaactaaacggtctcttgggatagctgaatttcttgatgatagccac
tttacaaatttggaatcagctttagttgcacttggttgcaaggaatgccttttgcccata
gagagtggaaaaactggtgaaatcagagctttacatgatgcattgactcgatgtggtgtg
atgttaactgagaggaaaaagagtgaatttaagatgagggatttggttcaggatctcagt
cggcttgtcaaaggatctattgaaccagttcgagatttagtttctggatttgagtttgcg
cctggtgcattgggggcattactctcttatgcagaactacttgctgatgagagtaattat
ggaaactataacatccaaagatataaccttgataactatatgaggttggattctgctgct
atgagggcacttaatatcctggaaagcaaaactgatgcaaacaaaaatttcagcttattt
ggtcttttgaacagaacctgtactgctggaatgggtaaacgattactgcacatgtggcta
aaacagcctttattagatgtggaggaaatcaattccaggttagatttggtacaagcattt
gtggaggatcctgcacttcgccaagatttgaggcagcatctgaaacgtatctcagacatc
gaacgactggtgcacaatctggaaaagaaaagagctggtttgcagcatgttgttaagctt
tatcagtcatgtataaggcttccatacatcaaaagtgcgttagagcgatatgatggagag
ttttcctctctgatcaaggaaaaatatttggatccccttgaattgtggactgatgatggc
cacttaaataagttccttgctctagtggaagctgctgttgaccttgatcaactcgagaat
ggagagtacttgatagcatctagttatgattctgctctttctgcactaaagaatgagcaa
gagtcgctggctcagcagatacacaatttgcataaacaaactgctaaggatcttgatctc
tctatagataaggcattaaagttagacaaaggcacacaattcggacatgtcttcagaatc
acaaagaaggaagagccaaaaataaggaaaaagcttacaacacaattcattgtcctggaa
acccgaaaagatggagtgaaatttactaataccaagcttaaaaagttgggggatcaatat
cagagaatactggaagagtacaaaagttgtcagaaagaactggtcagccgagttgttcac
actgtatctactttctcagaggtgttctgttctgtagctggcgcgctttctgaattggac
gtcttacttagttttgctgatttggcttctagttgtcctactccttatactaggccacac
atcactccatcggacgtgggggatatcatactagaagggagtagacatccttgtgtggag
gctcaggactgggtcaattttatacctaatgattgtaaacttgtaagaggaaagagttgg
ttccaaatcattacagggcctaatatgggtggaaaatccacatttatccggcaggttggt
gtgattattctaatggcacaagttggttcttttgttccttgtgagaaagctagcatttct
attcgtgattgcatttttgctcgagtgggtgctggtgattgccaactacgtggagtctct
acctttatgcaagaaatgcttgagactgcatctatactgaaaggatctacagataagtca
ctgataatcattgatgagttaggccgagggacatcaacttatgatggatttggtttggct
tgggccatttgtgagcaccttgttgaagtgataaatgcaccgactttgtttgcgacccac
tttcatgaattgaccgcattagctcaagaaaatgctgttcatgagcctaatatgaagcaa
gttgctggtgttgcaaactatcatgttagtgcacatattgactcgtcaagccgcaagttg
actatgctgtacaaggtcgagccaggggcatgtgatcaaagttttggtatccaggttgca
gaatttgcaaactttcctgaaagtgttgtctcccttgctagagaaaaggctgctgaattg
gaggatttctctcctactgctatcattccaaatgatcctagagaagaggttggttccaag
cgcaagagagaatatgattctgatgacatgtccagaggagctgctcttgcgcgcaagttt
ctaaaggagttctctgaaatgccattagatacaatggatgtacagcaggctttgcaaata
gttaacaagatgaaggatgacttgcaaacggaggcagtaaacagccaatggctacaacag
tttttctag
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