Fragaria vesca (woodland strawberry): 101293615
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Entry
101293615 CDS
T02666
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
101293615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fve03019
]
101293615
03009 Ribosome biogenesis [BR:
fve03009
]
101293615
04131 Membrane trafficking [BR:
fve04131
]
101293615
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
fve04147
]
101293615
Messenger RNA biogenesis [BR:
fve03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
101293615
Ribosome biogenesis [BR:
fve03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
101293615
Membrane trafficking [BR:
fve04131
]
SNARE
SNARE associated proteins
Others
101293615
Autophagy
Aggrephagy
Other aggrephagy associated proteins
101293615
Exosome [BR:
fve04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
101293615
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
CDC48_2
AAA_16
AAA_2
AAA_33
AAA_5
AAA_22
AAA_14
TIP49
NPHP3_N
RNA_helicase
AAA_17
nSTAND3
Mg_chelatase
AAA_28
AAA_18
Parvo_NS1
ATPase_2
AAA_lid_PRS2_C
Vps4_C
ABC_tran
Viral_helicase1
NB-ARC
AAA_7
nSTAND_NTPase5
TsaE
IstB_IS21
NACHT
Zeta_toxin
DUF815
AAA_24
Zot
Motif
Other DBs
NCBI-GeneID:
101293615
NCBI-ProteinID:
XP_004304451
LinkDB
All DBs
Position
LG6:complement(34999160..35003621)
Genome browser
AA seq
807 aa
AA seq
DB search
MTDKAESSDPKGTKRDFSTAILERKKAANRLVVDEAINDDNSVVALHPETMEKLQLFRGD
TILIKGKKRKDTICIALADDTCDEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVH
ILPVDDTIEGVTGSLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPSEYCV
VAPDTEIFCEGEPVRREDEDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN
APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA
LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLEKIGKETHGYVGADLAALCT
EAALQCIREKMDVIDLEDEEIDAEILNSMAVTNEHFSTALGTSNPSALRETVVEVPNVSW
DAIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
ANFISIKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSSGDAGGA
ADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQI
FKAALRKSPVAKDVDLNALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSEN
PEAMEEDVEDEVPEIRAAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGFGTEFRFPE
TGSAAATTGSDPFATSSAGADEDDLYN
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atgaccgataaagctgaatcgtccgaccctaaggggaccaagagggatttcagcactgcg
attctcgagcggaagaaggcggcgaatcgcctcgtcgtcgatgaggccatcaacgatgac
aactccgtcgtcgcgctccaccctgagaccatggagaagctccagctcttcaggggcgac
actattctcatcaagggaaagaaaaggaaggatacaatctgcattgcccttgctgatgat
acttgtgacgaaccaaagattaggatgaacaaggttgtgaggagcaacctaagggttagg
cttggggatgttgtctctgtccaccaatgtgctgatgtcaagtacggaaagcgggtgcac
attctccctgtggatgacactattgaaggtgtcactggaagtttgtttgatgcctacttg
aaaccttatttcttggaggcctaccgcccagtgaggaagggtgatctcttccttgtgaga
ggaggaatgaggagtgtagagttcaaggttattgagaccgatccttctgagtattgtgtt
gttgctccagacactgaaattttctgtgagggagagcctgtaagacgtgaggatgaggat
agattagatgaggttggttatgatgatgttggtggtgttaggaagcagatggctcagatt
cgtgaattagtggagctgccattgaggcatcctcagctctttaaatcaattggtgtgaag
ccaccaaagggtattctgttgtatgggccacctggatctggtaagactctaatcgccaga
gctgtcgcaaatgaaactggggcattctttttctgcattaatgggcctgaaatcatgtca
aaacttgctggagagagtgaaagcaacctcaggaaagcttttgaggaagcagagaagaat
gcaccatcaattatctttattgatgagattgattcaattgctcccaagagagagaagaca
catggtgaagttgagaggagaattgtgtcccagctcttgacacttatggatggacttaaa
tcccgtgcacatgtaattgttatgggggctacaaatcgtcctaacagtatagacccagct
ctcagaaggtttggtagatttgatagggagatagatatcggtgttccagatgaagttggg
cgtcttgaggtccttcgtattcatacaaagaacatgaagcttgctgaagatgttgatctg
gaaaagattggcaaggagacgcatggttatgttggtgctgatcttgctgctctatgtact
gaggctgcacttcagtgcatcagagagaagatggatgtcattgacttggaagatgaggaa
atagatgctgagatactcaactcaatggcagttacaaatgaacacttctctactgctctc
ggaacaagtaacccatctgctctccgtgaaacggttgttgaagtacccaatgtttcttgg
gatgctattggaggtcttgagaatgttaagagagaacttcaagagacagttcaatatcct
gttgagcatcctgagaaatttgagaaatttgggatgtcgccctcaaagggagttctattc
tatggccctcctgggtgtggtaaaactcttcttgccaaggccattgcaaatgagtgtcag
gcaaactttatcagtatcaagggacccgaattgcttactatgtggtttggagagagtgag
gccaatgtgcgggaaatctttgacaaggctcgtggatctgctccatgtgttctgttcttc
gacgaacttgattccattgctactcagagaggtagcagttcaggtgatgccggaggtgct
gcagatagggttttgaaccaactgcttacagagatggatggaatgtctgcaaagaagact
gttttcattattggcgccactaacaggcctgacattatagaccctgcacttctacgtccg
ggacgtctggatcaattgatatatatccctctccctgatgaggaatcccgccttcaaatt
ttcaaggcagccttgaggaaatctccagttgccaaagatgtggatcttaatgcccttgcc
aagtacacccaaggattcagtggtgctgatatcacagaaatttgccagcgtgcttgcaaa
tatgccatcagagagaatattgagaaggatattgaaagggagaggaggagaagcgagaat
cctgaggctatggaggaagatgtggaggatgaagtacctgaaatcagggcagctcacttt
gaggaatcaatgaagtttgctcgtcggagtgttagtgatgctgatatccgcaaataccag
gcatttgctcagacactgcagcagtcaagaggatttggaactgagtttaggtttccagaa
actggctctgctgcggccacaactggatctgatccttttgcaactagtagtgctggggcc
gatgaagatgacctttacaattag
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integrated database retrieval system
