Fragaria vesca (woodland strawberry): 101293860
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Entry
101293860 CDS
T02666
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 52A-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101293860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
fve03041
]
101293860
03009 Ribosome biogenesis [BR:
fve03009
]
101293860
Enzymes [BR:
fve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101293860
Spliceosome [BR:
fve03041
]
Complex A
U1 snRNP components
U1 related factors
101293860
Complex B
101293860
Ribosome biogenesis [BR:
fve03009
]
Eukaryotic type
Pre-60S particles
Helicases
101293860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
101293860
NCBI-ProteinID:
XP_004294724
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All DBs
Position
LG3:complement(20489650..20495990)
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AA seq
570 aa
AA seq
DB search
MSYVPPHLRNSSSTTTTTTTTSAAAKSSSATDADRSKLSYSASSNSHSSAAPFSSFSHSN
GSRWSSAAHSSANRAISPPDAVVPQWKPSERVLRMKPELIEEVCLRLNLDVSVSSDSAPP
PAPIESFTDMCLHPSIMKDIAFHGYTMPTPIQAQAMPIALSGRDLLGCAETGSGKTAAFA
IPMIQHCLAQAPVQRGDGPLALVLAPTRELAQQIEEEVKAFSKSLESFKTAIVVGGTNIA
EQRSELRAGVHIVVATPGRFIDHLQQGNTSVSRISFVVLDEADRMLDMGFEPQIREVMRN
LSEKHQTLLFSATMPEEIAGLAQEYLNNPVQVKVGKVSTPTANVTQSLEKVPDSEKTDRL
LGLLVEESSRAERAGHPFPLTIVFVERKTRCDDVAEALVAQGLHAVALHGGRTQTEREAA
LREFRKGTTNILVATDVASRGLDVSGVAHVINLDLPKSMEDYVHRIGRTGRAGSMGQATS
FYTDRDMFLVANIKKAIADVGSGNALSFATGKSARRKEREAAAAHNQARVSLSKSSSMGP
TSINIADKYKFMVSDPDNQKEGAADDAWDD
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtatgtgcctccacacctcagaaactccagctcaaccaccaccactaccaccacc
acctccgccgccgccaaatcctcatccgcaaccgacgctgatcgcagcaagctctcctac
tccgcctcctccaactctcactcgtccgctgctccattctcctcgttctcccactccaat
ggctctcgctggagctccgctgctcactcctcggccaaccgagctatctcaccgcccgac
gccgtcgtcccgcagtggaagccgtcggagcgcgtcctccgaatgaagccggagctgatt
gaggaggtgtgtttgcggcttaatttggatgtgtctgttagttcggactctgctcctccc
ccggcaccgattgagtcttttacagatatgtgtttgcaccctagcattatgaaggatata
gcgtttcatggatacactatgccgacgccaattcaggctcaagccatgccgattgctctc
agtggaagggatttattaggttgtgccgaaactggtagtggtaaaactgctgcgttcgca
attcctatgatacagcattgtttggctcaagctcctgttcagcgtggtgatggaccacta
gcattggtactggccccaactagagagcttgcacaacaaatagaggaagaggtcaaggct
tttagtaaatctctcgaatccttcaaaactgcaatagttgtgggtggaaccaacatagct
gagcagagatctgagctgcgagcaggagtacatatagtggttgctactcctggaaggttc
atagatcatttacagcaagggaatacttctgtatctaggatttcatttgttgttctggat
gaagctgatagaatgcttgacatgggttttgaaccacagataagagaggtgatgcggaac
ctatctgaaaagcatcaaactttgctgtttagtgcaactatgcctgaagagattgcaggg
ttagcccaggaatatttgaataatccagtgcaagtgaaggtgggaaaagtgagtacccct
acagcaaatgtaacacagagtttggagaaggttcctgacagtgagaagactgatcggctt
ctgggtttgctcgttgaggagtcatcccgagctgaaagggctggacatccctttccctta
actattgtatttgttgaaaggaagacacgctgtgatgatgttgctgaagctttggtagca
caaggtttgcatgcagttgctcttcatggtggacgtactcaaaccgaaagagaggctgct
ctgcgtgaatttagaaaaggcactaccaacattttggttgccaccgatgttgcctctcgt
ggtttggacgtctcaggagttgctcatgttatcaatttggatcttccaaagagcatggaa
gattatgtacaccggattggaaggactggaagagcgggatcaatgggacaagctacatcc
ttctacactgatcgtgatatgttccttgtggcgaatataaagaaagcaatagctgatgtg
ggatctgggaatgctctgtcttttgctacgggaaagagtgcaagaaggaaagaaagagaa
gcagctgctgctcacaaccaagctagggtttctctgtccaagtcttcaagtatggggccc
acatcaataaacattgccgacaagtataagttcatggtttctgacccggacaatcaaaaa
gagggtgcagcagatgatgcttgggacgactaa
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